miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26498 3' -57.9 NC_005357.1 + 17340 0.68 0.358749
Target:  5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3'
miRNA:   3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 17757 0.68 0.394188
Target:  5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3'
miRNA:   3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5'
26498 3' -57.9 NC_005357.1 + 19625 0.69 0.3256
Target:  5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3'
miRNA:   3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 20648 0.69 0.341056
Target:  5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3'
miRNA:   3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5'
26498 3' -57.9 NC_005357.1 + 21279 0.7 0.266281
Target:  5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3'
miRNA:   3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5'
26498 3' -57.9 NC_005357.1 + 23133 1.08 0.000451
Target:  5'- aUGAACCAGACCCAGGCGACCACGCUGu -3'
miRNA:   3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 23359 0.67 0.412737
Target:  5'- --cGCguGACCUcGGCGAggaCACGCUGa -3'
miRNA:   3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 23521 0.67 0.412737
Target:  5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3'
miRNA:   3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5'
26498 3' -57.9 NC_005357.1 + 23631 0.66 0.460372
Target:  5'- --cGCCAGAUcaCCAacaagguGGCGGCCucgACGCUGa -3'
miRNA:   3'- acuUGGUCUG--GGU-------CCGCUGG---UGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 23726 0.67 0.403395
Target:  5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3'
miRNA:   3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 24272 0.67 0.403395
Target:  5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3'
miRNA:   3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 24964 0.66 0.491965
Target:  5'- -cGugCAGGCCCuGGCGuggcACCugGCc- -3'
miRNA:   3'- acUugGUCUGGGuCCGC----UGGugCGac -5'
26498 3' -57.9 NC_005357.1 + 25917 0.67 0.412737
Target:  5'- -cGGCCAGACCaccGGC-ACCuCGCUGg -3'
miRNA:   3'- acUUGGUCUGGgu-CCGcUGGuGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 26147 0.72 0.194073
Target:  5'- -cGACCGGGuagccuUCCGGGUGGCCGCGCg- -3'
miRNA:   3'- acUUGGUCU------GGGUCCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 27430 0.67 0.422212
Target:  5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3'
miRNA:   3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 28241 0.66 0.461374
Target:  5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3'
miRNA:   3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 29010 0.66 0.491965
Target:  5'- cGAcgUAGGCgaCCAGGCG-CCGCGCUu -3'
miRNA:   3'- aCUugGUCUG--GGUCCGCuGGUGCGAc -5'
26498 3' -57.9 NC_005357.1 + 29455 0.66 0.471462
Target:  5'- gUGcuCCuGGCaCCAGGCGACgaaGCGCg- -3'
miRNA:   3'- -ACuuGGuCUG-GGUCCGCUGg--UGCGac -5'
26498 3' -57.9 NC_005357.1 + 30401 0.68 0.394188
Target:  5'- cUGGGCaAGACCUcgccGGCcacGGCCGCGCUGc -3'
miRNA:   3'- -ACUUGgUCUGGGu---CCG---CUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 36508 0.67 0.412737
Target:  5'- aUGAcaACCAGGacuccaauCCC-GGCGgcacacucACCACGCUGg -3'
miRNA:   3'- -ACU--UGGUCU--------GGGuCCGC--------UGGUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.