Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 20648 | 0.69 | 0.341056 |
|
Target: 5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3' miRNA: 3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5' |
|||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 17340 | 0.68 | 0.358749 |
|
Target: 5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3' miRNA: 3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5' |
|||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 2659 | 0.68 | 0.367396 |
|
Target: 5'- aGGGCCAGcggucGCCCAGGUGuucgaucaGCCACGg-- -3' miRNA: 3'- aCUUGGUC-----UGGGUCCGC--------UGGUGCgac -5' |
|||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 39240 | 0.68 | 0.393275 |
|
Target: 5'- gUGAGCaagcuguacgcagCGGACgCCGGGCuuGCCAUGCUGc -3' miRNA: 3'- -ACUUG-------------GUCUG-GGUCCGc-UGGUGCGAC- -5' |
|||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 17757 | 0.68 | 0.394188 |
|
Target: 5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3' miRNA: 3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5' |
|||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 30401 | 0.68 | 0.394188 |
|
Target: 5'- cUGGGCaAGACCUcgccGGCcacGGCCGCGCUGc -3' miRNA: 3'- -ACUUGgUCUGGGu---CCG---CUGGUGCGAC- -5' |
|||||||
| 26498 | 3' | -57.9 | NC_005357.1 | + | 23133 | 1.08 | 0.000451 |
|
Target: 5'- aUGAACCAGACCCAGGCGACCACGCUGu -3' miRNA: 3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home