miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26498 3' -57.9 NC_005357.1 + 41438 0.74 0.147585
Target:  5'- gUGAACCAcGGCaccggCCAGGCGGCCAagugGCUGc -3'
miRNA:   3'- -ACUUGGU-CUG-----GGUCCGCUGGUg---CGAC- -5'
26498 3' -57.9 NC_005357.1 + 24964 0.66 0.491965
Target:  5'- -cGugCAGGCCCuGGCGuggcACCugGCc- -3'
miRNA:   3'- acUugGUCUGGGuCCGC----UGGugCGac -5'
26498 3' -57.9 NC_005357.1 + 7691 0.66 0.491965
Target:  5'- cGGGCUuGACCUcGGCGGCCG-GCUu -3'
miRNA:   3'- aCUUGGuCUGGGuCCGCUGGUgCGAc -5'
26498 3' -57.9 NC_005357.1 + 5133 0.67 0.422212
Target:  5'- uUGAACUgcaacGugCCgcgcAGGCGGCCGuCGCUGc -3'
miRNA:   3'- -ACUUGGu----CugGG----UCCGCUGGU-GCGAC- -5'
26498 3' -57.9 NC_005357.1 + 2725 0.66 0.50237
Target:  5'- -uGGCCGGACgCUugAGcGCGGCCcgGCGCUGc -3'
miRNA:   3'- acUUGGUCUG-GG--UC-CGCUGG--UGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 7168 0.66 0.481661
Target:  5'- aGGGCCGGGCgcuugucggauUCGGG-GGCgACGCUGg -3'
miRNA:   3'- aCUUGGUCUG-----------GGUCCgCUGgUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 23133 1.08 0.000451
Target:  5'- aUGAACCAGACCCAGGCGACCACGCUGu -3'
miRNA:   3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 10066 0.66 0.50237
Target:  5'- -cGGCCGGGgCCucggcGGCGACCGCaGCg- -3'
miRNA:   3'- acUUGGUCUgGGu----CCGCUGGUG-CGac -5'
26498 3' -57.9 NC_005357.1 + 16800 0.66 0.50237
Target:  5'- cGAGgUGGACgCGcugcuGGCGACCGCGCc- -3'
miRNA:   3'- aCUUgGUCUGgGU-----CCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 17104 0.66 0.461374
Target:  5'- -cGGCCGGGCCUugGGGCuuGACCACGa-- -3'
miRNA:   3'- acUUGGUCUGGG--UCCG--CUGGUGCgac -5'
26498 3' -57.9 NC_005357.1 + 8533 0.7 0.29478
Target:  5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3'
miRNA:   3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5'
26498 3' -57.9 NC_005357.1 + 29010 0.66 0.491965
Target:  5'- cGAcgUAGGCgaCCAGGCG-CCGCGCUu -3'
miRNA:   3'- aCUugGUCUG--GGUCCGCuGGUGCGAc -5'
26498 3' -57.9 NC_005357.1 + 38024 0.68 0.367396
Target:  5'- cGAcuGCCgcacgcucaAGGCCCGGcGCGACgGCGcCUGg -3'
miRNA:   3'- aCU--UGG---------UCUGGGUC-CGCUGgUGC-GAC- -5'
26498 3' -57.9 NC_005357.1 + 40667 0.68 0.376187
Target:  5'- cGAcgcGCCAGGCgCAGGCcGGCCAUGa-- -3'
miRNA:   3'- aCU---UGGUCUGgGUCCG-CUGGUGCgac -5'
26498 3' -57.9 NC_005357.1 + 16581 0.68 0.376187
Target:  5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3'
miRNA:   3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 23726 0.67 0.403395
Target:  5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3'
miRNA:   3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 28241 0.66 0.461374
Target:  5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3'
miRNA:   3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 23521 0.67 0.412737
Target:  5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3'
miRNA:   3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5'
26498 3' -57.9 NC_005357.1 + 27430 0.67 0.422212
Target:  5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3'
miRNA:   3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 3862 0.66 0.461374
Target:  5'- uUGuACCAGGCgCCGucgcuGuaGGCCGCGCUGc -3'
miRNA:   3'- -ACuUGGUCUG-GGU-----CcgCUGGUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.