Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 37330 | 0.66 | 0.461374 |
Target: 5'- cGcACCGGACgCUGGGcCGGCCGC-CUGu -3' miRNA: 3'- aCuUGGUCUG-GGUCC-GCUGGUGcGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 28241 | 0.66 | 0.461374 |
Target: 5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3' miRNA: 3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 17104 | 0.66 | 0.461374 |
Target: 5'- -cGGCCGGGCCUugGGGCuuGACCACGa-- -3' miRNA: 3'- acUUGGUCUGGG--UCCG--CUGGUGCgac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 3862 | 0.66 | 0.461374 |
Target: 5'- uUGuACCAGGCgCCGucgcuGuaGGCCGCGCUGc -3' miRNA: 3'- -ACuUGGUCUG-GGU-----CcgCUGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 27430 | 0.67 | 0.422212 |
Target: 5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3' miRNA: 3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 23521 | 0.67 | 0.412737 |
Target: 5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3' miRNA: 3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 37069 | 0.74 | 0.160351 |
Target: 5'- cUGGGCgCGGugC-AGGCGGCCACGCa- -3' miRNA: 3'- -ACUUG-GUCugGgUCCGCUGGUGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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