Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 25917 | 0.67 | 0.412737 |
Target: 5'- -cGGCCAGACCaccGGC-ACCuCGCUGg -3' miRNA: 3'- acUUGGUCUGGgu-CCGcUGGuGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 23359 | 0.67 | 0.412737 |
Target: 5'- --cGCguGACCUcGGCGAggaCACGCUGa -3' miRNA: 3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 36508 | 0.67 | 0.412737 |
Target: 5'- aUGAcaACCAGGacuccaauCCC-GGCGgcacacucACCACGCUGg -3' miRNA: 3'- -ACU--UGGUCU--------GGGuCCGC--------UGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 24272 | 0.67 | 0.403395 |
Target: 5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3' miRNA: 3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 23726 | 0.67 | 0.403395 |
Target: 5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3' miRNA: 3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 13344 | 0.67 | 0.403395 |
Target: 5'- cGGGCCuGACCUcGGCGcccgaggaugACC-CGCUGa -3' miRNA: 3'- aCUUGGuCUGGGuCCGC----------UGGuGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 17757 | 0.68 | 0.394188 |
Target: 5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3' miRNA: 3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 30401 | 0.68 | 0.394188 |
Target: 5'- cUGGGCaAGACCUcgccGGCcacGGCCGCGCUGc -3' miRNA: 3'- -ACUUGgUCUGGGu---CCG---CUGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 39240 | 0.68 | 0.393275 |
Target: 5'- gUGAGCaagcuguacgcagCGGACgCCGGGCuuGCCAUGCUGc -3' miRNA: 3'- -ACUUG-------------GUCUG-GGUCCGc-UGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 2001 | 0.68 | 0.385118 |
Target: 5'- cUGAuCUugAGGCCCAGGCG-CU-CGCUGg -3' miRNA: 3'- -ACUuGG--UCUGGGUCCGCuGGuGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 16581 | 0.68 | 0.376187 |
Target: 5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3' miRNA: 3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 40667 | 0.68 | 0.376187 |
Target: 5'- cGAcgcGCCAGGCgCAGGCcGGCCAUGa-- -3' miRNA: 3'- aCU---UGGUCUGgGUCCG-CUGGUGCgac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 38024 | 0.68 | 0.367396 |
Target: 5'- cGAcuGCCgcacgcucaAGGCCCGGcGCGACgGCGcCUGg -3' miRNA: 3'- aCU--UGG---------UCUGGGUC-CGCUGgUGC-GAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 2659 | 0.68 | 0.367396 |
Target: 5'- aGGGCCAGcggucGCCCAGGUGuucgaucaGCCACGg-- -3' miRNA: 3'- aCUUGGUC-----UGGGUCCGC--------UGGUGCgac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 16792 | 0.68 | 0.362191 |
Target: 5'- aUGGucGCCAGuugccaguuggucgcGCCCAGGCGGCgcaguuCACGCg- -3' miRNA: 3'- -ACU--UGGUC---------------UGGGUCCGCUG------GUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 17340 | 0.68 | 0.358749 |
Target: 5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3' miRNA: 3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 20648 | 0.69 | 0.341056 |
Target: 5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3' miRNA: 3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 2821 | 0.69 | 0.333669 |
Target: 5'- cGGGCCAGGUgCucGCGGCCACGCg- -3' miRNA: 3'- aCUUGGUCUGgGucCGCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 19625 | 0.69 | 0.3256 |
Target: 5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3' miRNA: 3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 8533 | 0.7 | 0.29478 |
Target: 5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3' miRNA: 3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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