miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2650 5' -56.5 NC_001491.2 + 106617 0.66 0.910272
Target:  5'- -gAGUAUCUCCAGCuGCGUU-GUCa-- -3'
miRNA:   3'- ggUCGUAGAGGUCG-CGCAAgCGGagc -5'
2650 5' -56.5 NC_001491.2 + 13309 0.66 0.90419
Target:  5'- cCCAgGCAUCUCCAGCagauUGUucuUCGCUUa- -3'
miRNA:   3'- -GGU-CGUAGAGGUCGc---GCA---AGCGGAgc -5'
2650 5' -56.5 NC_001491.2 + 110334 0.66 0.88458
Target:  5'- aCGGUAUCggCUAGCGCGUcCGCgUg- -3'
miRNA:   3'- gGUCGUAGa-GGUCGCGCAaGCGgAgc -5'
2650 5' -56.5 NC_001491.2 + 4700 0.66 0.877598
Target:  5'- uCgGGCcUCUCCAGCGUcuuggccaGaUUgGCCUCGc -3'
miRNA:   3'- -GgUCGuAGAGGUCGCG--------C-AAgCGGAGC- -5'
2650 5' -56.5 NC_001491.2 + 107329 0.67 0.862995
Target:  5'- gCAGCgAUCUCCAcUGCGUUgaCGUgUCGg -3'
miRNA:   3'- gGUCG-UAGAGGUcGCGCAA--GCGgAGC- -5'
2650 5' -56.5 NC_001491.2 + 85245 0.67 0.862995
Target:  5'- -uGGCAgCUCCcggcaGGCGCGacaguugUCGUCUCGa -3'
miRNA:   3'- ggUCGUaGAGG-----UCGCGCa------AGCGGAGC- -5'
2650 5' -56.5 NC_001491.2 + 3510 0.67 0.828894
Target:  5'- gCCGcCGUCUCCAGCccggccggguuggaGCacagCGCCUCGg -3'
miRNA:   3'- -GGUcGUAGAGGUCG--------------CGcaa-GCGGAGC- -5'
2650 5' -56.5 NC_001491.2 + 30705 0.68 0.823021
Target:  5'- uUCGGCAUC-CCguuGGCGCGacgCGCUUCc -3'
miRNA:   3'- -GGUCGUAGaGG---UCGCGCaa-GCGGAGc -5'
2650 5' -56.5 NC_001491.2 + 110739 0.68 0.796934
Target:  5'- gCCAGCGUCUCUAcuuCGCGUUuucuaaCGCCa-- -3'
miRNA:   3'- -GGUCGUAGAGGUc--GCGCAA------GCGGagc -5'
2650 5' -56.5 NC_001491.2 + 93187 0.68 0.787935
Target:  5'- uCUAGCGUgUUagccagguagcgCAGCGCGUcCGUCUCGu -3'
miRNA:   3'- -GGUCGUAgAG------------GUCGCGCAaGCGGAGC- -5'
2650 5' -56.5 NC_001491.2 + 119170 0.69 0.778798
Target:  5'- uUCAGCGgaccCUCCA-CGCGUUUGaguCCUCGg -3'
miRNA:   3'- -GGUCGUa---GAGGUcGCGCAAGC---GGAGC- -5'
2650 5' -56.5 NC_001491.2 + 6618 0.69 0.778798
Target:  5'- gCAuGCGUCUCCuccccgggaAGCGCGUcgCGCCa-- -3'
miRNA:   3'- gGU-CGUAGAGG---------UCGCGCAa-GCGGagc -5'
2650 5' -56.5 NC_001491.2 + 83764 0.69 0.769533
Target:  5'- aCCuGCAgg-CCAGCGCGa--GCUUCGg -3'
miRNA:   3'- -GGuCGUagaGGUCGCGCaagCGGAGC- -5'
2650 5' -56.5 NC_001491.2 + 34932 0.69 0.769533
Target:  5'- cCCGGCggCUCuCGGCGCGagCcCCUCu -3'
miRNA:   3'- -GGUCGuaGAG-GUCGCGCaaGcGGAGc -5'
2650 5' -56.5 NC_001491.2 + 123331 0.71 0.651516
Target:  5'- -aAGCGcgCUCCAGCGCGUggagcuaugcUCGCaCUUGc -3'
miRNA:   3'- ggUCGUa-GAGGUCGCGCA----------AGCG-GAGC- -5'
2650 5' -56.5 NC_001491.2 + 27112 0.71 0.631236
Target:  5'- cCCGGCGccgCUCCggAGCGCGUccgcUGCCUCc -3'
miRNA:   3'- -GGUCGUa--GAGG--UCGCGCAa---GCGGAGc -5'
2650 5' -56.5 NC_001491.2 + 91238 0.71 0.621092
Target:  5'- gCCGGCAgcuaccgCUCCGGCGguUGUuugCGCCUCc -3'
miRNA:   3'- -GGUCGUa------GAGGUCGC--GCAa--GCGGAGc -5'
2650 5' -56.5 NC_001491.2 + 32811 0.74 0.473607
Target:  5'- cCgGGCGUCUaCCAGCGCGagcCGCUUCu -3'
miRNA:   3'- -GgUCGUAGA-GGUCGCGCaa-GCGGAGc -5'
2650 5' -56.5 NC_001491.2 + 102592 1.11 0.001958
Target:  5'- gCCAGCAUCUCCAGCGCGUUCGCCUCGg -3'
miRNA:   3'- -GGUCGUAGAGGUCGCGCAAGCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.