miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26500 3' -53.5 NC_005357.1 + 30568 0.66 0.72417
Target:  5'- gGGCGAuAUUGGCgCgGGGU--UCGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCG-GaCCCGuuAGUGGG- -5'
26500 3' -53.5 NC_005357.1 + 33889 0.66 0.713023
Target:  5'- ---cGAGCgCGGCCugcgauaccUGGGCAAguUCGCCg -3'
miRNA:   3'- uuguUUUG-GCCGG---------ACCCGUU--AGUGGg -5'
26500 3' -53.5 NC_005357.1 + 14179 0.66 0.713023
Target:  5'- cGCAAcauGgUGaGCCUGGcGCAGUCcgACCCg -3'
miRNA:   3'- uUGUUu--UgGC-CGGACC-CGUUAG--UGGG- -5'
26500 3' -53.5 NC_005357.1 + 31841 0.66 0.713023
Target:  5'- uGCAGGcugCGcGCCUGGGUAcuaCGCCCg -3'
miRNA:   3'- uUGUUUug-GC-CGGACCCGUua-GUGGG- -5'
26500 3' -53.5 NC_005357.1 + 23746 0.66 0.709661
Target:  5'- -cCGAGGCCcgcgugguguaacaGGCCgggggcGGGCGAcCGCCCc -3'
miRNA:   3'- uuGUUUUGG--------------CCGGa-----CCCGUUaGUGGG- -5'
26500 3' -53.5 NC_005357.1 + 36257 0.66 0.701789
Target:  5'- cGGCAAGACCGGCCUGcGCugggaaGAUgACg- -3'
miRNA:   3'- -UUGUUUUGGCCGGACcCG------UUAgUGgg -5'
26500 3' -53.5 NC_005357.1 + 6264 0.66 0.701789
Target:  5'- uGCGGuugauCUGcGCgCUGGGCAggccgaacagGUCGCCCa -3'
miRNA:   3'- uUGUUuu---GGC-CG-GACCCGU----------UAGUGGG- -5'
26500 3' -53.5 NC_005357.1 + 17734 0.66 0.701789
Target:  5'- uGGCAccgauGGACa-GCCUGGGCGuggacGUgGCCCg -3'
miRNA:   3'- -UUGU-----UUUGgcCGGACCCGU-----UAgUGGG- -5'
26500 3' -53.5 NC_005357.1 + 19236 0.66 0.701789
Target:  5'- cGACGAGGCCGaCCUGcuGCuGUCGCaCCa -3'
miRNA:   3'- -UUGUUUUGGCcGGACc-CGuUAGUG-GG- -5'
26500 3' -53.5 NC_005357.1 + 39499 0.66 0.698404
Target:  5'- cGACGcgguguGGGCCGGCaugggaaUGGGCAAgacgguuuccgcgcUCACCg -3'
miRNA:   3'- -UUGU------UUUGGCCGg------ACCCGUU--------------AGUGGg -5'
26500 3' -53.5 NC_005357.1 + 1555 0.66 0.690482
Target:  5'- gAAUucGACCGGCUggaUGGGCA--UAUCCu -3'
miRNA:   3'- -UUGuuUUGGCCGG---ACCCGUuaGUGGG- -5'
26500 3' -53.5 NC_005357.1 + 25891 0.66 0.690482
Target:  5'- gAGCAAGG-CGGCCUGuacGGCuauAUCGgCCa -3'
miRNA:   3'- -UUGUUUUgGCCGGAC---CCGu--UAGUgGG- -5'
26500 3' -53.5 NC_005357.1 + 30124 0.66 0.683667
Target:  5'- cAACGAAuucgacgccgccguaGCCGGCacgCUGGGCcagcaACCCg -3'
miRNA:   3'- -UUGUUU---------------UGGCCG---GACCCGuuag-UGGG- -5'
26500 3' -53.5 NC_005357.1 + 12192 0.66 0.679113
Target:  5'- gAACGAAACCGGCCcGcGCugccuGCCCc -3'
miRNA:   3'- -UUGUUUUGGCCGGaCcCGuuag-UGGG- -5'
26500 3' -53.5 NC_005357.1 + 30870 0.67 0.667696
Target:  5'- uGGCuucgauGACCGGC--GGGCAGUCcuaucaggauGCCCg -3'
miRNA:   3'- -UUGuu----UUGGCCGgaCCCGUUAG----------UGGG- -5'
26500 3' -53.5 NC_005357.1 + 13801 0.67 0.656242
Target:  5'- cGCGGAACUGGCC--GGCc-UCAUCCg -3'
miRNA:   3'- uUGUUUUGGCCGGacCCGuuAGUGGG- -5'
26500 3' -53.5 NC_005357.1 + 4036 0.67 0.656242
Target:  5'- -uCAAAGCCGGCCgcggcgaGcGGCAGgccagCgGCCCa -3'
miRNA:   3'- uuGUUUUGGCCGGa------C-CCGUUa----G-UGGG- -5'
26500 3' -53.5 NC_005357.1 + 5524 0.67 0.644764
Target:  5'- gGACAc-GCCGGCCgcccaGGUuccgcccaGGUCGCCCg -3'
miRNA:   3'- -UUGUuuUGGCCGGac---CCG--------UUAGUGGG- -5'
26500 3' -53.5 NC_005357.1 + 26262 0.67 0.644764
Target:  5'- gGGCAcccGCCGGCCUGGuCGGcUCGCgCa -3'
miRNA:   3'- -UUGUuu-UGGCCGGACCcGUU-AGUGgG- -5'
26500 3' -53.5 NC_005357.1 + 41337 0.67 0.644764
Target:  5'- cGCGcGACaCGGCCaaGGCAAUCuACCg -3'
miRNA:   3'- uUGUuUUG-GCCGGacCCGUUAG-UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.