miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26502 3' -50.6 NC_005357.1 + 22384 1.14 0.000877
Target:  5'- cGCAACUGGUGCUCGACAAGAUGCUGCc -3'
miRNA:   3'- -CGUUGACCACGAGCUGUUCUACGACG- -5'
26502 3' -50.6 NC_005357.1 + 32525 0.78 0.244291
Target:  5'- uGCAgGCUGGUGaugcCGGcCAGGAUGCUGCc -3'
miRNA:   3'- -CGU-UGACCACga--GCU-GUUCUACGACG- -5'
26502 3' -50.6 NC_005357.1 + 8594 0.77 0.279763
Target:  5'- uGCGGcCUGGUGCUgGAUAAGcugGUUGCg -3'
miRNA:   3'- -CGUU-GACCACGAgCUGUUCua-CGACG- -5'
26502 3' -50.6 NC_005357.1 + 32853 0.74 0.450711
Target:  5'- cGCAAC--GUGUUCGACcGGAUGCUcGCc -3'
miRNA:   3'- -CGUUGacCACGAGCUGuUCUACGA-CG- -5'
26502 3' -50.6 NC_005357.1 + 31326 0.72 0.526632
Target:  5'- cCAAUUGGccgcaGC-CGACAAGGUGCUcGCg -3'
miRNA:   3'- cGUUGACCa----CGaGCUGUUCUACGA-CG- -5'
26502 3' -50.6 NC_005357.1 + 15058 0.71 0.572124
Target:  5'- --uGCUGGccgaaugGCUgGACGAG-UGCUGCg -3'
miRNA:   3'- cguUGACCa------CGAgCUGUUCuACGACG- -5'
26502 3' -50.6 NC_005357.1 + 20298 0.7 0.665058
Target:  5'- aGUAGCgGGuUGCUCGGCGGccgGUUGCg -3'
miRNA:   3'- -CGUUGaCC-ACGAGCUGUUcuaCGACG- -5'
26502 3' -50.6 NC_005357.1 + 39365 0.69 0.699665
Target:  5'- uGCGGCUcgGGcGCUUGAC---GUGCUGCu -3'
miRNA:   3'- -CGUUGA--CCaCGAGCUGuucUACGACG- -5'
26502 3' -50.6 NC_005357.1 + 10753 0.69 0.72239
Target:  5'- aGCAguuACUGGUGCUUGugGccGGUGUagGCc -3'
miRNA:   3'- -CGU---UGACCACGAGCugUu-CUACGa-CG- -5'
26502 3' -50.6 NC_005357.1 + 35189 0.69 0.729134
Target:  5'- gGCGGCcgacaucgccgagGGUGagcgCGGCGcAGAUGCUGCc -3'
miRNA:   3'- -CGUUGa------------CCACga--GCUGU-UCUACGACG- -5'
26502 3' -50.6 NC_005357.1 + 20255 0.69 0.733608
Target:  5'- cGCAGaUGGUGCgcgaauUCGGCAAGGacaagUGCaGCa -3'
miRNA:   3'- -CGUUgACCACG------AGCUGUUCU-----ACGaCG- -5'
26502 3' -50.6 NC_005357.1 + 10146 0.68 0.787716
Target:  5'- cGCAacgcGCUGGUGUUUucCuGGAUuGCUGCu -3'
miRNA:   3'- -CGU----UGACCACGAGcuGuUCUA-CGACG- -5'
26502 3' -50.6 NC_005357.1 + 5359 0.68 0.787716
Target:  5'- gGCGACaGccaacaUGCUCGACAGGugcGUGCUGa -3'
miRNA:   3'- -CGUUGaCc-----ACGAGCUGUUC---UACGACg -5'
26502 3' -50.6 NC_005357.1 + 25043 0.67 0.798046
Target:  5'- -aAGC-GGUGCgUCGGCGcGAUGCagGCa -3'
miRNA:   3'- cgUUGaCCACG-AGCUGUuCUACGa-CG- -5'
26502 3' -50.6 NC_005357.1 + 40214 0.67 0.798046
Target:  5'- uGCGcgUGGUGCUaccCGACGAGG-GCgucgGCa -3'
miRNA:   3'- -CGUugACCACGA---GCUGUUCUaCGa---CG- -5'
26502 3' -50.6 NC_005357.1 + 38575 0.67 0.798046
Target:  5'- -aAGCUGGg---CGGCGAGGUGC-GCa -3'
miRNA:   3'- cgUUGACCacgaGCUGUUCUACGaCG- -5'
26502 3' -50.6 NC_005357.1 + 3282 0.67 0.808182
Target:  5'- cGCAACgccGUGCUUccuCGGGAUGCUuuGCg -3'
miRNA:   3'- -CGUUGac-CACGAGcu-GUUCUACGA--CG- -5'
26502 3' -50.6 NC_005357.1 + 21454 0.67 0.808182
Target:  5'- uGCGGCgGGgg--CGGCAGGAUGUUGg -3'
miRNA:   3'- -CGUUGaCCacgaGCUGUUCUACGACg -5'
26502 3' -50.6 NC_005357.1 + 32928 0.67 0.81811
Target:  5'- aCGGCUGcUGUUCGGCcAGGgcgaccacgGCUGCg -3'
miRNA:   3'- cGUUGACcACGAGCUGuUCUa--------CGACG- -5'
26502 3' -50.6 NC_005357.1 + 32566 0.67 0.81811
Target:  5'- aGCAGCgcgccGGUGCcacgcucaUCGACGccgaaaccgAGGUGCaGCg -3'
miRNA:   3'- -CGUUGa----CCACG--------AGCUGU---------UCUACGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.