miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26502 5' -57.9 NC_005357.1 + 36075 0.67 0.436855
Target:  5'- -aGCGCcccgGCCuucggGCCGGGCGcuUUGGCu -3'
miRNA:   3'- ucCGCG----CGGua---CGGCUCGUucAACCG- -5'
26502 5' -57.9 NC_005357.1 + 9507 0.67 0.436855
Target:  5'- uGGcCGaacaGCCA-GCCGuGCAGGccgUGGCc -3'
miRNA:   3'- uCC-GCg---CGGUaCGGCuCGUUCa--ACCG- -5'
26502 5' -57.9 NC_005357.1 + 34356 0.67 0.431005
Target:  5'- cGuGCGCGCCuugggcggugaacugAUgGUCGAGCAgcGGUUGaGCg -3'
miRNA:   3'- uC-CGCGCGG---------------UA-CGGCUCGU--UCAAC-CG- -5'
26502 5' -57.9 NC_005357.1 + 8748 0.67 0.427131
Target:  5'- aGGGCGCGCgcguauucaCGUGCCGcuucgGGCAGcacgcGGCg -3'
miRNA:   3'- -UCCGCGCG---------GUACGGC-----UCGUUcaa--CCG- -5'
26502 5' -57.9 NC_005357.1 + 11509 0.67 0.427131
Target:  5'- aGGGCaGCGCCugcGCUGGcgugaggcccuGCGAGcgGGCa -3'
miRNA:   3'- -UCCG-CGCGGua-CGGCU-----------CGUUCaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 24152 0.67 0.427131
Target:  5'- cGGCcCGCUgacgGCCG-GCAAGUUcucGGCg -3'
miRNA:   3'- uCCGcGCGGua--CGGCuCGUUCAA---CCG- -5'
26502 5' -57.9 NC_005357.1 + 27290 0.67 0.426165
Target:  5'- uGGGCGCauccgccGCCAgcaugggGUCGGGCcuGGUaGGCa -3'
miRNA:   3'- -UCCGCG-------CGGUa------CGGCUCGu-UCAaCCG- -5'
26502 5' -57.9 NC_005357.1 + 30121 0.67 0.421358
Target:  5'- gAGGcCGCGCCAgaacacgccGCCGGccugcaccGCGucggacaucagcggcAGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGUa--------CGGCU--------CGU---------------UCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 12320 0.67 0.417535
Target:  5'- uGGCGCgGCCucaucGCCuGGGaCAAGggccgUGGCg -3'
miRNA:   3'- uCCGCG-CGGua---CGG-CUC-GUUCa----ACCG- -5'
26502 5' -57.9 NC_005357.1 + 18494 0.67 0.411841
Target:  5'- cGGGCGUgcgccugaccaucacGCCuAUGCCGGcauggaagccGCGGGcgUGGCg -3'
miRNA:   3'- -UCCGCG---------------CGG-UACGGCU----------CGUUCa-ACCG- -5'
26502 5' -57.9 NC_005357.1 + 17303 0.67 0.40246
Target:  5'- cGGGCGCGCauccauuccggcauaUggGCCGGcuuggucuuGCGuuGGUUGGCa -3'
miRNA:   3'- -UCCGCGCG---------------GuaCGGCU---------CGU--UCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 31978 0.67 0.398745
Target:  5'- aGGGCGaCGCCAagggcgccauUGCCaAGCu-GUUGGa -3'
miRNA:   3'- -UCCGC-GCGGU----------ACGGcUCGuuCAACCg -5'
26502 5' -57.9 NC_005357.1 + 40175 0.67 0.398745
Target:  5'- uGGuGCGCGUCGaacUGCCGGcCAAGgcccGGCg -3'
miRNA:   3'- -UC-CGCGCGGU---ACGGCUcGUUCaa--CCG- -5'
26502 5' -57.9 NC_005357.1 + 17350 0.67 0.389555
Target:  5'- cGGGCGCGCUgcGCUGGGU-----GGCg -3'
miRNA:   3'- -UCCGCGCGGuaCGGCUCGuucaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 31686 0.67 0.389555
Target:  5'- cGaGCGCGCCcuUGgCGAGCAGcaaGGCg -3'
miRNA:   3'- uC-CGCGCGGu-ACgGCUCGUUcaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 9895 0.67 0.389555
Target:  5'- cAGGCGCgugGCgAUGUCGAGCugcacuucGAGgaaaaagUGGCc -3'
miRNA:   3'- -UCCGCG---CGgUACGGCUCG--------UUCa------ACCG- -5'
26502 5' -57.9 NC_005357.1 + 16581 0.67 0.389555
Target:  5'- cGaCGCGCCGgacgagGCCGAccacGCGAugguGUUGGCg -3'
miRNA:   3'- uCcGCGCGGUa-----CGGCU----CGUU----CAACCG- -5'
26502 5' -57.9 NC_005357.1 + 29596 0.68 0.384108
Target:  5'- cAGGCGCGCgguuugccaguugucCAgcGCCGGGCGcuugUGGCc -3'
miRNA:   3'- -UCCGCGCG---------------GUa-CGGCUCGUuca-ACCG- -5'
26502 5' -57.9 NC_005357.1 + 23742 0.68 0.380505
Target:  5'- uGGCgcgcagcaGCGCCAUGCCGGcGCcaccgGGCc -3'
miRNA:   3'- uCCG--------CGCGGUACGGCU-CGuucaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 17092 0.68 0.380505
Target:  5'- cGGCGCGguuCUcgGCCGGGCcuuggGGCu -3'
miRNA:   3'- uCCGCGC---GGuaCGGCUCGuucaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.