Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26503 | 3' | -58.3 | NC_005357.1 | + | 22143 | 1.07 | 0.000377 |
Target: 5'- cAACCCGCUACUGGUGCGGGCAACGACg -3' miRNA: 3'- -UUGGGCGAUGACCACGCCCGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 40340 | 0.77 | 0.073207 |
Target: 5'- gGGCgCGCUACauggacgacaucgUGGUGCuGGGCGACGACc -3' miRNA: 3'- -UUGgGCGAUG-------------ACCACG-CCCGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 14243 | 0.77 | 0.075595 |
Target: 5'- aGGCgCCGCaccUGCUGGgcGUGGGCAACGGCg -3' miRNA: 3'- -UUG-GGCG---AUGACCa-CGCCCGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 25759 | 0.77 | 0.082492 |
Target: 5'- gGGCgCGCUGCUGG-GCGGcgGCAACGAUg -3' miRNA: 3'- -UUGgGCGAUGACCaCGCC--CGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 23564 | 0.72 | 0.16789 |
Target: 5'- cGACaUCGCcgGCaGGUGCGGGCGggggGCGACg -3' miRNA: 3'- -UUG-GGCGa-UGaCCACGCCCGU----UGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 40207 | 0.72 | 0.187387 |
Target: 5'- cGCCUGCUGCgcgUGGUGCuacccgacgaGGGCGuCGGCa -3' miRNA: 3'- uUGGGCGAUG---ACCACG----------CCCGUuGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 18366 | 0.71 | 0.197865 |
Target: 5'- --gCCGCUACU-GUGCGcGGCAugGAa -3' miRNA: 3'- uugGGCGAUGAcCACGC-CCGUugCUg -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 38875 | 0.71 | 0.208851 |
Target: 5'- cAGCCCGCUGCUGcGcuauucgGCGGcGCcuggAACGGCa -3' miRNA: 3'- -UUGGGCGAUGAC-Ca------CGCC-CG----UUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 19917 | 0.71 | 0.214539 |
Target: 5'- uGCUCGCUGCgGGgaugaugGCGGGCA-UGACc -3' miRNA: 3'- uUGGGCGAUGaCCa------CGCCCGUuGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 15129 | 0.71 | 0.226314 |
Target: 5'- aGGCCCGaccccaUGCUGGcgGCggaugcgcccaGGGCGACGGCu -3' miRNA: 3'- -UUGGGCg-----AUGACCa-CG-----------CCCGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 23176 | 0.7 | 0.251504 |
Target: 5'- cGGCCCcCUGCUGGUGCGacaGCAGCa-- -3' miRNA: 3'- -UUGGGcGAUGACCACGCc--CGUUGcug -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 8553 | 0.69 | 0.286187 |
Target: 5'- cAGCCgCGCcgAUg---GCGGGCAGCGACa -3' miRNA: 3'- -UUGG-GCGa-UGaccaCGCCCGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 31084 | 0.69 | 0.293561 |
Target: 5'- gGugCCGCUGCUcaccucGGUGCaGGcCGGCGAg -3' miRNA: 3'- -UugGGCGAUGA------CCACGcCC-GUUGCUg -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 35016 | 0.68 | 0.323729 |
Target: 5'- cGCCCGCUGCUcuauacccuguccGGUcuguauuCGGGCGucaACGACg -3' miRNA: 3'- uUGGGCGAUGA-------------CCAc------GCCCGU---UGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 32459 | 0.68 | 0.324533 |
Target: 5'- cGCCCcCUACUgccgaGGUGgGGGCGGcCGAUg -3' miRNA: 3'- uUGGGcGAUGA-----CCACgCCCGUU-GCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 15049 | 0.68 | 0.324533 |
Target: 5'- uGCCCGCgu-UGaUGCGGGCAAuguuCGACu -3' miRNA: 3'- uUGGGCGaugACcACGCCCGUU----GCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 6340 | 0.68 | 0.332646 |
Target: 5'- gAACUCGCc-CUGGUGCgucuGGGUGGCGAa -3' miRNA: 3'- -UUGGGCGauGACCACG----CCCGUUGCUg -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 35876 | 0.68 | 0.340907 |
Target: 5'- gGAUgCGCUGacgcCUGGcgauuCGGGCGACGACg -3' miRNA: 3'- -UUGgGCGAU----GACCac---GCCCGUUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 23749 | 0.67 | 0.366572 |
Target: 5'- aGGCCCGCg--UGGUGUaacaggccggGGGCgGGCGACc -3' miRNA: 3'- -UUGGGCGaugACCACG----------CCCG-UUGCUG- -5' |
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26503 | 3' | -58.3 | NC_005357.1 | + | 41427 | 0.67 | 0.366572 |
Target: 5'- -uCCCgGCcAgUGGcGCGGGCAGCGGg -3' miRNA: 3'- uuGGG-CGaUgACCaCGCCCGUUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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