miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26503 5' -56 NC_005357.1 + 6921 0.67 0.528037
Target:  5'- -aGGCAuuGCGGCCGACCCAuuccuucGuGGCAGa -3'
miRNA:   3'- cgUCGU--UGUCGGCUGGGU-------CcUCGUUc -5'
26503 5' -56 NC_005357.1 + 29638 0.67 0.525867
Target:  5'- cGCAcCAGCcugucugaGGCCGAcuucaagcauuuuuCCCAGGAGCGc- -3'
miRNA:   3'- -CGUcGUUG--------UCGGCU--------------GGGUCCUCGUuc -5'
26503 5' -56 NC_005357.1 + 21703 0.67 0.518299
Target:  5'- cCAGCAGCAuGUCGGCCUgauGGGGUg-- -3'
miRNA:   3'- cGUCGUUGU-CGGCUGGGu--CCUCGuuc -5'
26503 5' -56 NC_005357.1 + 6591 0.67 0.518299
Target:  5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3'
miRNA:   3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5'
26503 5' -56 NC_005357.1 + 32442 0.67 0.51507
Target:  5'- gGCAGCGACuGCCccuacGCCCccuacugccgagguGGGGGCGGc -3'
miRNA:   3'- -CGUCGUUGuCGGc----UGGG--------------UCCUCGUUc -5'
26503 5' -56 NC_005357.1 + 41902 0.68 0.475958
Target:  5'- cGCGGUGACGGCCGACagaaCCGccuGCAAGc -3'
miRNA:   3'- -CGUCGUUGUCGGCUG----GGUccuCGUUC- -5'
26503 5' -56 NC_005357.1 + 10910 0.68 0.475958
Target:  5'- aCGGCAacACAGCgaGGCCCAGcAGCAc- -3'
miRNA:   3'- cGUCGU--UGUCGg-CUGGGUCcUCGUuc -5'
26503 5' -56 NC_005357.1 + 27621 0.68 0.46564
Target:  5'- -aGGCAGC-GCCG-CCgAGGuGCAGGu -3'
miRNA:   3'- cgUCGUUGuCGGCuGGgUCCuCGUUC- -5'
26503 5' -56 NC_005357.1 + 9240 0.68 0.45544
Target:  5'- cCAGCggUGGCCGugCCGaGGGCGc- -3'
miRNA:   3'- cGUCGuuGUCGGCugGGUcCUCGUuc -5'
26503 5' -56 NC_005357.1 + 10079 0.68 0.425585
Target:  5'- gGCGGCGACcGCagCGACCUGGGcGGCGGu -3'
miRNA:   3'- -CGUCGUUGuCG--GCUGGGUCC-UCGUUc -5'
26503 5' -56 NC_005357.1 + 5085 0.68 0.424611
Target:  5'- uGCGGUuggaacaGGCGGCCGGCCCAgcguccGGuGCGGc -3'
miRNA:   3'- -CGUCG-------UUGUCGGCUGGGU------CCuCGUUc -5'
26503 5' -56 NC_005357.1 + 15362 0.69 0.415896
Target:  5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3'
miRNA:   3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5'
26503 5' -56 NC_005357.1 + 32100 0.69 0.406342
Target:  5'- cGCAGCGACGGCuaCGGCCUGGcGAaacugGCGAa -3'
miRNA:   3'- -CGUCGUUGUCG--GCUGGGUC-CU-----CGUUc -5'
26503 5' -56 NC_005357.1 + 10831 0.69 0.405394
Target:  5'- aGCAGCAgguAgGGCCagaagcaGGCCCAGGcgAGCAGc -3'
miRNA:   3'- -CGUCGU---UgUCGG-------CUGGGUCC--UCGUUc -5'
26503 5' -56 NC_005357.1 + 18582 0.69 0.404448
Target:  5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3'
miRNA:   3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5'
26503 5' -56 NC_005357.1 + 37474 0.69 0.396928
Target:  5'- aGCAGCGcgauacGCGGCUGcaucguggcGCCCGaGGGCAAGa -3'
miRNA:   3'- -CGUCGU------UGUCGGC---------UGGGUcCUCGUUC- -5'
26503 5' -56 NC_005357.1 + 37282 0.69 0.396928
Target:  5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3'
miRNA:   3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5'
26503 5' -56 NC_005357.1 + 22211 0.69 0.387655
Target:  5'- -aGGcCAACAGCCGGCCgCGGGcGCu-- -3'
miRNA:   3'- cgUC-GUUGUCGGCUGG-GUCCuCGuuc -5'
26503 5' -56 NC_005357.1 + 39502 0.69 0.378525
Target:  5'- cGCGGUGugGGCCGGCaUGGGAauggGCAAGa -3'
miRNA:   3'- -CGUCGUugUCGGCUGgGUCCU----CGUUC- -5'
26503 5' -56 NC_005357.1 + 41231 0.7 0.369541
Target:  5'- gGCGGUuauuccaacAACccGGCCGACCCcGGcGGCGAGa -3'
miRNA:   3'- -CGUCG---------UUG--UCGGCUGGGuCC-UCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.