miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26504 3' -55.1 NC_005357.1 + 6817 0.66 0.627719
Target:  5'- ---cUGGGGucgauCAGGAACGAuGCGgAGa -3'
miRNA:   3'- auaaGCCCCu----GUCCUUGCU-CGCgUCc -5'
26504 3' -55.1 NC_005357.1 + 18039 0.66 0.627719
Target:  5'- --gUCGGcGGGCugcuuGGGGGCcuuaccGGCGCGGGg -3'
miRNA:   3'- auaAGCC-CCUG-----UCCUUGc-----UCGCGUCC- -5'
26504 3' -55.1 NC_005357.1 + 15295 0.66 0.616493
Target:  5'- -uUUCGGcGACAGGA-CGAGCGgAa- -3'
miRNA:   3'- auAAGCCcCUGUCCUuGCUCGCgUcc -5'
26504 3' -55.1 NC_005357.1 + 10304 0.67 0.594092
Target:  5'- gAUUCGGGGGCGucgaggucGGcAGCG-GC-CAGGg -3'
miRNA:   3'- aUAAGCCCCUGU--------CC-UUGCuCGcGUCC- -5'
26504 3' -55.1 NC_005357.1 + 6160 0.67 0.581824
Target:  5'- ----aGGGGugAGGcACGGGCacccuuaGCGGGc -3'
miRNA:   3'- auaagCCCCugUCCuUGCUCG-------CGUCC- -5'
26504 3' -55.1 NC_005357.1 + 39951 0.67 0.576265
Target:  5'- ---gUGGGGGCAGGcuugguuccuggacaAagGCGAGCGCcuGGGc -3'
miRNA:   3'- auaaGCCCCUGUCC---------------U--UGCUCGCG--UCC- -5'
26504 3' -55.1 NC_005357.1 + 23568 0.67 0.571826
Target:  5'- --aUCGccGGCAGGuGCGGGCGgGGGg -3'
miRNA:   3'- auaAGCccCUGUCCuUGCUCGCgUCC- -5'
26504 3' -55.1 NC_005357.1 + 14375 0.67 0.560765
Target:  5'- ---gCGGGGGCAuccgcgccgcGGAACGuaGGCGUAGc -3'
miRNA:   3'- auaaGCCCCUGU----------CCUUGC--UCGCGUCc -5'
26504 3' -55.1 NC_005357.1 + 16468 0.68 0.53883
Target:  5'- --aUCGGGGGCGugacGGAcagguCGGGCGCGa- -3'
miRNA:   3'- auaAGCCCCUGU----CCUu----GCUCGCGUcc -5'
26504 3' -55.1 NC_005357.1 + 24299 0.68 0.527972
Target:  5'- ---gUGGGGGCGGuGAggucgGCGAGCagccGCGGGu -3'
miRNA:   3'- auaaGCCCCUGUC-CU-----UGCUCG----CGUCC- -5'
26504 3' -55.1 NC_005357.1 + 21787 1.08 0.000855
Target:  5'- aUAUUCGGGGACAGGAACGAGCGCAGGc -3'
miRNA:   3'- -AUAAGCCCCUGUCCUUGCUCGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.