Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26505 | 3' | -51.8 | NC_005357.1 | + | 8118 | 0.66 | 0.869339 |
Target: 5'- uGCAc--CGCGCg-GCCGGCGUugguugugGGCGUg -3' miRNA: 3'- -CGUuuuGCGCGagUGGCUGCA--------CUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 18697 | 0.66 | 0.869339 |
Target: 5'- cGCugcuGCGCGC-CACCGaggcacuggcccGCGaccugGGCGCu -3' miRNA: 3'- -CGuuu-UGCGCGaGUGGC------------UGCa----CUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 34236 | 0.66 | 0.869339 |
Target: 5'- gGCcguGCGCGaugaaaUCGCCGGCagcauccgGGCGCa -3' miRNA: 3'- -CGuuuUGCGCg-----AGUGGCUGca------CUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 18476 | 0.66 | 0.869339 |
Target: 5'- gGC-AAAUGCcgacCUCGCCGGgCGUG-CGCc -3' miRNA: 3'- -CGuUUUGCGc---GAGUGGCU-GCACuGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 6635 | 0.66 | 0.869339 |
Target: 5'- aGCuucGCGCGCUUgGCCGGaGUGucCGCg -3' miRNA: 3'- -CGuuuUGCGCGAG-UGGCUgCACu-GCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 37479 | 0.66 | 0.861003 |
Target: 5'- cGCGAuACGCGg-CugCauCGUGGCGCc -3' miRNA: 3'- -CGUUuUGCGCgaGugGcuGCACUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 31740 | 0.66 | 0.861003 |
Target: 5'- gGCcguGCGCGCU-GCCGuCaaGACGCa -3' miRNA: 3'- -CGuuuUGCGCGAgUGGCuGcaCUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 1651 | 0.66 | 0.861003 |
Target: 5'- gGUAGGucuGCGCGUccugUUugCG-CGUGAUGCu -3' miRNA: 3'- -CGUUU---UGCGCG----AGugGCuGCACUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 19178 | 0.66 | 0.861003 |
Target: 5'- cGCugccCGUGC-CGCCGGCGUcGAUGa -3' miRNA: 3'- -CGuuuuGCGCGaGUGGCUGCA-CUGCg -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 40703 | 0.66 | 0.851541 |
Target: 5'- cGCGAggacuugGACGCcCUCGCCGGC---ACGCc -3' miRNA: 3'- -CGUU-------UUGCGcGAGUGGCUGcacUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 26238 | 0.66 | 0.843578 |
Target: 5'- gGCGAAugGCGCg---UGGCGUcggugaacuccGACGCg -3' miRNA: 3'- -CGUUUugCGCGagugGCUGCA-----------CUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 38488 | 0.66 | 0.843578 |
Target: 5'- aGCAAauacAACGUGaccaUCGCgGACGgcaGCGCg -3' miRNA: 3'- -CGUU----UUGCGCg---AGUGgCUGCac-UGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 13752 | 0.66 | 0.843578 |
Target: 5'- aCGugGCGCGCcgCGCUGGCGaGGcCGCc -3' miRNA: 3'- cGUuuUGCGCGa-GUGGCUGCaCU-GCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 18525 | 0.66 | 0.843578 |
Target: 5'- gGCAugGaa-GC-CGCgGGCGUGGCGCa -3' miRNA: 3'- -CGUuuUgcgCGaGUGgCUGCACUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 32618 | 0.66 | 0.843578 |
Target: 5'- uGCGcAAACGCuGCUUGacugguUCGGCGUG-CGCg -3' miRNA: 3'- -CGU-UUUGCG-CGAGU------GGCUGCACuGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 29422 | 0.66 | 0.843578 |
Target: 5'- cGCGuugcccACGCGCUCGC--ACGUcGCGCc -3' miRNA: 3'- -CGUuu----UGCGCGAGUGgcUGCAcUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 13848 | 0.66 | 0.834506 |
Target: 5'- aCAccACGCuGCcggUgGCCGACGUG-CGCg -3' miRNA: 3'- cGUuuUGCG-CG---AgUGGCUGCACuGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 26233 | 0.66 | 0.834506 |
Target: 5'- cGCAGuuuuGCGCGCgUCGCCGAag-GcACGg -3' miRNA: 3'- -CGUUu---UGCGCG-AGUGGCUgcaC-UGCg -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 38389 | 0.66 | 0.834506 |
Target: 5'- cGCccGGCuGCGCUCGacCCGcGCGgcaUGACGCu -3' miRNA: 3'- -CGuuUUG-CGCGAGU--GGC-UGC---ACUGCG- -5' |
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26505 | 3' | -51.8 | NC_005357.1 | + | 27824 | 0.66 | 0.834506 |
Target: 5'- cGC---GCGCGCU-GCCcGCGgUGGCGCc -3' miRNA: 3'- -CGuuuUGCGCGAgUGGcUGC-ACUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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