miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26505 3' -51.8 NC_005357.1 + 300 0.71 0.598408
Target:  5'- cGgAAGGCGCGCUCuuCCGuccaggGCGUGcCGUa -3'
miRNA:   3'- -CgUUUUGCGCGAGu-GGC------UGCACuGCG- -5'
26505 3' -51.8 NC_005357.1 + 345 0.68 0.721157
Target:  5'- uGCcacACGUGCUCGCCGACcauccggGUG-UGCu -3'
miRNA:   3'- -CGuuuUGCGCGAGUGGCUG-------CACuGCG- -5'
26505 3' -51.8 NC_005357.1 + 1651 0.66 0.861003
Target:  5'- gGUAGGucuGCGCGUccugUUugCG-CGUGAUGCu -3'
miRNA:   3'- -CGUUU---UGCGCG----AGugGCuGCACUGCG- -5'
26505 3' -51.8 NC_005357.1 + 2008 0.69 0.700122
Target:  5'- -uGAGGCccagGCGCUCGCUGGCGaagucGCGCa -3'
miRNA:   3'- cgUUUUG----CGCGAGUGGCUGCac---UGCG- -5'
26505 3' -51.8 NC_005357.1 + 2343 0.71 0.574748
Target:  5'- uGCGugGCGCGCgugCGCCGcaauucggccugcACGUGGCa- -3'
miRNA:   3'- -CGUuuUGCGCGa--GUGGC-------------UGCACUGcg -5'
26505 3' -51.8 NC_005357.1 + 2582 0.66 0.825208
Target:  5'- cGCGugcGCGCGCUUGCCGcCcUGuuGCa -3'
miRNA:   3'- -CGUuu-UGCGCGAGUGGCuGcACugCG- -5'
26505 3' -51.8 NC_005357.1 + 3823 0.69 0.688944
Target:  5'- gGCAG---GCGCUUGCCGugGUGAg-- -3'
miRNA:   3'- -CGUUuugCGCGAGUGGCugCACUgcg -5'
26505 3' -51.8 NC_005357.1 + 4010 0.68 0.744008
Target:  5'- cCAAAACGCGCcggcCACCaGCGUcAUGCc -3'
miRNA:   3'- cGUUUUGCGCGa---GUGGcUGCAcUGCG- -5'
26505 3' -51.8 NC_005357.1 + 5313 0.68 0.765279
Target:  5'- uCGAGGC-CGUagGCCGcgagcACGUGGCGCa -3'
miRNA:   3'- cGUUUUGcGCGagUGGC-----UGCACUGCG- -5'
26505 3' -51.8 NC_005357.1 + 5612 0.72 0.520532
Target:  5'- gGCGGggUGCGuUUCGC--GCGUGGCGCg -3'
miRNA:   3'- -CGUUuuGCGC-GAGUGgcUGCACUGCG- -5'
26505 3' -51.8 NC_005357.1 + 6635 0.66 0.869339
Target:  5'- aGCuucGCGCGCUUgGCCGGaGUGucCGCg -3'
miRNA:   3'- -CGuuuUGCGCGAG-UGGCUgCACu-GCG- -5'
26505 3' -51.8 NC_005357.1 + 7095 0.68 0.765279
Target:  5'- cCAcgGCGCGCcCACgCGcacgauggacuGCGUGAUGCc -3'
miRNA:   3'- cGUuuUGCGCGaGUG-GC-----------UGCACUGCG- -5'
26505 3' -51.8 NC_005357.1 + 7141 0.69 0.696776
Target:  5'- uGCAuAAGgGCGCUCAU-GACGUugaagcccaggcccGACGCg -3'
miRNA:   3'- -CGU-UUUgCGCGAGUGgCUGCA--------------CUGCG- -5'
26505 3' -51.8 NC_005357.1 + 7537 0.68 0.744008
Target:  5'- -----gUGCGCUCGgCGGCGUGcucgauccgcgGCGCc -3'
miRNA:   3'- cguuuuGCGCGAGUgGCUGCAC-----------UGCG- -5'
26505 3' -51.8 NC_005357.1 + 8118 0.66 0.869339
Target:  5'- uGCAc--CGCGCg-GCCGGCGUugguugugGGCGUg -3'
miRNA:   3'- -CGUuuuGCGCGagUGGCUGCA--------CUGCG- -5'
26505 3' -51.8 NC_005357.1 + 8746 0.67 0.815694
Target:  5'- cCAGGGCGCGCgcgUAUUcACGUGcCGCu -3'
miRNA:   3'- cGUUUUGCGCGa--GUGGcUGCACuGCG- -5'
26505 3' -51.8 NC_005357.1 + 8899 0.69 0.700122
Target:  5'- uGUGAAugGCGCU-AUCGGCGgcGCGCu -3'
miRNA:   3'- -CGUUUugCGCGAgUGGCUGCacUGCG- -5'
26505 3' -51.8 NC_005357.1 + 9176 0.68 0.737528
Target:  5'- aGCGAcaacuuGGCGCcgucgacguuggccuGCUCGgCGGCGcGGCGCa -3'
miRNA:   3'- -CGUU------UUGCG---------------CGAGUgGCUGCaCUGCG- -5'
26505 3' -51.8 NC_005357.1 + 9983 0.69 0.715651
Target:  5'- aGUAGGGgGCGUaggggcagUCGCUgccgucgucuuggcaGACGUGGCGCg -3'
miRNA:   3'- -CGUUUUgCGCG--------AGUGG---------------CUGCACUGCG- -5'
26505 3' -51.8 NC_005357.1 + 10662 0.69 0.677708
Target:  5'- cGUGAAACGCGC-CGCCGuguccaguuGCGUcuuGACGg -3'
miRNA:   3'- -CGUUUUGCGCGaGUGGC---------UGCA---CUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.