miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26505 5' -56.4 NC_005357.1 + 4673 0.66 0.597071
Target:  5'- gGCGGGcaccagcGCGCCgGAUAGcGcggcgagaauGGCCGGCa -3'
miRNA:   3'- -CGCCCa------UGUGGaCUAUC-Cu---------CCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 1018 0.66 0.586009
Target:  5'- aGCGucgaACACCUGGaAGGccacGGCCGGCg -3'
miRNA:   3'- -CGCcca-UGUGGACUaUCCu---CCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 6262 0.66 0.574986
Target:  5'- gGUGcGGUugAUCUGcgcgcUGGGcAGGCCGAa -3'
miRNA:   3'- -CGC-CCAugUGGACu----AUCC-UCCGGCUg -5'
26505 5' -56.4 NC_005357.1 + 28882 0.66 0.553092
Target:  5'- cGUGGG--CACC-GAgucAGGcGGCCGACa -3'
miRNA:   3'- -CGCCCauGUGGaCUa--UCCuCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 28125 0.67 0.542238
Target:  5'- aCGcGGUACGCCUGGUcGGGcGGCa-GCa -3'
miRNA:   3'- cGC-CCAUGUGGACUA-UCCuCCGgcUG- -5'
26505 5' -56.4 NC_005357.1 + 5508 0.67 0.541157
Target:  5'- aGCGccaacucGGUGC-CUUGGUAGuuccAGGCCGGCa -3'
miRNA:   3'- -CGC-------CCAUGuGGACUAUCc---UCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 11542 0.67 0.531455
Target:  5'- aGCGGGcau-CCUGAUAGGAcugcccGCCGGu -3'
miRNA:   3'- -CGCCCauguGGACUAUCCUc-----CGGCUg -5'
26505 5' -56.4 NC_005357.1 + 15500 0.67 0.519685
Target:  5'- gGCaGGGUuuGCAgUucugcggUGAUGGGcAGGCCGAUa -3'
miRNA:   3'- -CG-CCCA--UGUgG-------ACUAUCC-UCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 38985 0.67 0.510132
Target:  5'- cGCGGcGUcugugacCACCUGAuucuugagUAGcGGGGCCGAa -3'
miRNA:   3'- -CGCC-CAu------GUGGACU--------AUC-CUCCGGCUg -5'
26505 5' -56.4 NC_005357.1 + 41154 0.67 0.489174
Target:  5'- gGCGGGcauCACCUcGAaacuuGGGGGCCacuGACa -3'
miRNA:   3'- -CGCCCau-GUGGA-CUau---CCUCCGG---CUG- -5'
26505 5' -56.4 NC_005357.1 + 35561 0.67 0.489174
Target:  5'- gGUGGacGUGCcgACgUGGUGGGGGGCCuACg -3'
miRNA:   3'- -CGCC--CAUG--UGgACUAUCCUCCGGcUG- -5'
26505 5' -56.4 NC_005357.1 + 17056 0.68 0.448534
Target:  5'- -aGGGcuucugGCGCCUGcccGGuGGCCGGCu -3'
miRNA:   3'- cgCCCa-----UGUGGACuauCCuCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 5477 0.68 0.438668
Target:  5'- gGCGaGGUGUugCcGAUGGGGGGUaCGGCg -3'
miRNA:   3'- -CGC-CCAUGugGaCUAUCCUCCG-GCUG- -5'
26505 5' -56.4 NC_005357.1 + 35342 0.68 0.428926
Target:  5'- cGUGGGcGCGCC--GUGGGuAGGCCGcgGCg -3'
miRNA:   3'- -CGCCCaUGUGGacUAUCC-UCCGGC--UG- -5'
26505 5' -56.4 NC_005357.1 + 24547 0.69 0.391277
Target:  5'- cGCGuGGUcGCGCagcgcggcGAUGGcGAGGCCGGCc -3'
miRNA:   3'- -CGC-CCA-UGUGga------CUAUC-CUCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 26877 0.7 0.330796
Target:  5'- gGCGccaUugACCUGGacguGGAGGCCGGCa -3'
miRNA:   3'- -CGCcc-AugUGGACUau--CCUCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 4366 0.71 0.322739
Target:  5'- uGCcGGUGCGCgUGAaGGcGAcGGCCGACu -3'
miRNA:   3'- -CGcCCAUGUGgACUaUC-CU-CCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 36890 0.71 0.314829
Target:  5'- gGCGGGcg-ACCUGGgcggaaccUGGGcGGCCGGCg -3'
miRNA:   3'- -CGCCCaugUGGACU--------AUCCuCCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 19025 0.72 0.270455
Target:  5'- aGUGGGUGCGguagcCCUGGUAgcGGccGCCGGCg -3'
miRNA:   3'- -CGCCCAUGU-----GGACUAU--CCucCGGCUG- -5'
26505 5' -56.4 NC_005357.1 + 21366 1.12 0.000329
Target:  5'- aGCGGGUACACCUGAUAGGAGGCCGACa -3'
miRNA:   3'- -CGCCCAUGUGGACUAUCCUCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.