Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26506 | 5' | -61.7 | NC_005357.1 | + | 42240 | 0.67 | 0.275666 |
Target: 5'- gCCcgGCagCGUGaCGGuGCCCAGCgacaccgggGCGCa -3' miRNA: 3'- aGGuaCGa-GCGC-GUC-CGGGUCG---------CGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 41331 | 0.66 | 0.292567 |
Target: 5'- -aCAUGC-CGCGCGacacGGCCaaggcaaucuaccGCGCGCg -3' miRNA: 3'- agGUACGaGCGCGU----CCGGgu-----------CGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 39190 | 0.67 | 0.248614 |
Target: 5'- gCC-UGCUCGgGCAGGUCgaauuauucaucgUGGCGgGCa -3' miRNA: 3'- aGGuACGAGCgCGUCCGG-------------GUCGCgCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 38019 | 0.66 | 0.296917 |
Target: 5'- aCCuacgacUGC-CGCacGCucaAGGCCCGGCGCGa -3' miRNA: 3'- aGGu-----ACGaGCG--CG---UCCGGGUCGCGCg -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 37742 | 0.67 | 0.282612 |
Target: 5'- gCCAUuCUCGcCGCGcuaUCCGGCGCGCu -3' miRNA: 3'- aGGUAcGAGC-GCGUcc-GGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 36674 | 0.66 | 0.304277 |
Target: 5'- gCC---CUgGCGCAcucgcuGCCCGGCGCGCu -3' miRNA: 3'- aGGuacGAgCGCGUc-----CGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 36153 | 0.76 | 0.060144 |
Target: 5'- aCC-UGUUCG-GCcuGCCCAGCGCGCa -3' miRNA: 3'- aGGuACGAGCgCGucCGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35832 | 0.66 | 0.289695 |
Target: 5'- gCCAUGCUCuacgugGUGCcGGCCguGCuGgGCu -3' miRNA: 3'- aGGUACGAG------CGCGuCCGGguCG-CgCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35781 | 0.7 | 0.155288 |
Target: 5'- aCCAUGa--GCGCGgacacuccGGCCaAGCGCGCg -3' miRNA: 3'- aGGUACgagCGCGU--------CCGGgUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35710 | 0.66 | 0.326412 |
Target: 5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3' miRNA: 3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35690 | 0.73 | 0.105741 |
Target: 5'- uUCC--GCUauugaGCGCGgcGGCCCAGCGCaGCg -3' miRNA: 3'- -AGGuaCGAg----CGCGU--CCGGGUCGCG-CG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35246 | 0.71 | 0.139304 |
Target: 5'- gUCCcgGCU-GCGUcaGGGCgUCAGCGCGUc -3' miRNA: 3'- -AGGuaCGAgCGCG--UCCG-GGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 34264 | 0.67 | 0.275666 |
Target: 5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3' miRNA: 3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 32416 | 0.69 | 0.187288 |
Target: 5'- aCCAgg---GCGgGGGCCgGGCGCGCg -3' miRNA: 3'- aGGUacgagCGCgUCCGGgUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 31831 | 0.72 | 0.114921 |
Target: 5'- uUCUAUGCg-GUGCAGGCU--GCGCGCc -3' miRNA: 3'- -AGGUACGagCGCGUCCGGguCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 31031 | 0.74 | 0.079888 |
Target: 5'- gCCGagGCaaUCGCGCGGGCCaacGUGCGCg -3' miRNA: 3'- aGGUa-CG--AGCGCGUCCGGgu-CGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 29560 | 0.72 | 0.111781 |
Target: 5'- gCCGUGCucgggguaUCGCGuCAGgucggccgcGCCCAgGCGCGCg -3' miRNA: 3'- aGGUACG--------AGCGC-GUC---------CGGGU-CGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 29231 | 0.69 | 0.184332 |
Target: 5'- -aCAUGCagGCGUacaacgccggccaagGGcGCCCAGCGCGg -3' miRNA: 3'- agGUACGagCGCG---------------UC-CGGGUCGCGCg -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 28754 | 0.67 | 0.275666 |
Target: 5'- gUCCA-GCgcggUGCGCuu-CUCGGCGCGCa -3' miRNA: 3'- -AGGUaCGa---GCGCGuccGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 28566 | 0.66 | 0.319417 |
Target: 5'- gCCAUcGCggCGCGCAcgucGGCcaCCGGCaGCGUg -3' miRNA: 3'- aGGUA-CGa-GCGCGU----CCG--GGUCG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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