miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26506 5' -61.7 NC_005357.1 + 21035 1.1 0.000124
Target:  5'- uUCCAUGCUCGCGCAGGCCCAGCGCGCc -3'
miRNA:   3'- -AGGUACGAGCGCGUCCGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 18348 0.7 0.172916
Target:  5'- cCCGUGCccCGCGCGGucGCCgCuacuGUGCGCg -3'
miRNA:   3'- aGGUACGa-GCGCGUC--CGG-Gu---CGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 32416 0.69 0.187288
Target:  5'- aCCAgg---GCGgGGGCCgGGCGCGCg -3'
miRNA:   3'- aGGUacgagCGCgUCCGGgUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 24615 0.66 0.319417
Target:  5'- cCCGaggGUUcCGUGCAGGCggaauaCuGCGCGCg -3'
miRNA:   3'- aGGUa--CGA-GCGCGUCCGg-----GuCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 18243 0.74 0.089412
Target:  5'- -aCGUGCUCGCGCucauggacacGCCgaAGCGCGCa -3'
miRNA:   3'- agGUACGAGCGCGuc--------CGGg-UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 4388 0.73 0.100008
Target:  5'- gCCAggcGCcgUCGCGcCGGGCCUugAGCGUGCg -3'
miRNA:   3'- aGGUa--CG--AGCGC-GUCCGGG--UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 2727 0.73 0.105741
Target:  5'- gCCGgacGCUUgaGCGC-GGCCCGGCGCuGCu -3'
miRNA:   3'- aGGUa--CGAG--CGCGuCCGGGUCGCG-CG- -5'
26506 5' -61.7 NC_005357.1 + 31831 0.72 0.114921
Target:  5'- uUCUAUGCg-GUGCAGGCU--GCGCGCc -3'
miRNA:   3'- -AGGUACGagCGCGUCCGGguCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 35246 0.71 0.139304
Target:  5'- gUCCcgGCU-GCGUcaGGGCgUCAGCGCGUc -3'
miRNA:   3'- -AGGuaCGAgCGCG--UCCG-GGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 11188 0.7 0.172916
Target:  5'- gCCcgGCUCGUaGCuGGgCC-GCGCGCc -3'
miRNA:   3'- aGGuaCGAGCG-CGuCCgGGuCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 35781 0.7 0.155288
Target:  5'- aCCAUGa--GCGCGgacacuccGGCCaAGCGCGCg -3'
miRNA:   3'- aGGUACgagCGCGU--------CCGGgUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 7770 0.71 0.13189
Target:  5'- aUCCAgGCUCGCGCcuucGCCCuGCGagGCg -3'
miRNA:   3'- -AGGUaCGAGCGCGuc--CGGGuCGCg-CG- -5'
26506 5' -61.7 NC_005357.1 + 24955 0.79 0.031937
Target:  5'- gCCGcUGUUCGUGCAGGCCCuGGCGUGg -3'
miRNA:   3'- aGGU-ACGAGCGCGUCCGGG-UCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 13060 0.7 0.172916
Target:  5'- gUCCGaggGCUgGgGCaAGGCcaCCGGCGCGUg -3'
miRNA:   3'- -AGGUa--CGAgCgCG-UCCG--GGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 36153 0.76 0.060144
Target:  5'- aCC-UGUUCG-GCcuGCCCAGCGCGCa -3'
miRNA:   3'- aGGuACGAGCgCGucCGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 6482 0.71 0.13189
Target:  5'- -gCAcGC-CGCGCAGGCCCGcauucaCGCGCu -3'
miRNA:   3'- agGUaCGaGCGCGUCCGGGUc-----GCGCG- -5'
26506 5' -61.7 NC_005357.1 + 14139 0.7 0.172916
Target:  5'- cUUCAaGUUCuGCGCcGuGuCCCAGCGCGCg -3'
miRNA:   3'- -AGGUaCGAG-CGCGuC-C-GGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 29231 0.69 0.184332
Target:  5'- -aCAUGCagGCGUacaacgccggccaagGGcGCCCAGCGCGg -3'
miRNA:   3'- agGUACGagCGCG---------------UC-CGGGUCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 2556 0.74 0.089412
Target:  5'- aCCuugGCaUGUGCGacacGGCCCAGCGCGUg -3'
miRNA:   3'- aGGua-CGaGCGCGU----CCGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 35690 0.73 0.105741
Target:  5'- uUCC--GCUauugaGCGCGgcGGCCCAGCGCaGCg -3'
miRNA:   3'- -AGGuaCGAg----CGCGU--CCGGGUCGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.