Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26506 | 5' | -61.7 | NC_005357.1 | + | 21247 | 0.66 | 0.289695 |
Target: 5'- aCCAgcagcagGCcgCGCaGCAGGCcgcgcuguugaaCCAGgGCGCg -3' miRNA: 3'- aGGUa------CGa-GCG-CGUCCG------------GGUCgCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 9129 | 0.66 | 0.295461 |
Target: 5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 9203 | 0.66 | 0.327197 |
Target: 5'- gCC-UGCUCggcgGCGCGGcGCacguucugCGGCGCGCc -3' miRNA: 3'- aGGuACGAG----CGCGUC-CGg-------GUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 19914 | 0.66 | 0.311778 |
Target: 5'- -gCGUGCUCGCuGCGGGgaugaUGGCGgGCa -3' miRNA: 3'- agGUACGAGCG-CGUCCgg---GUCGCgCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35710 | 0.66 | 0.326412 |
Target: 5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3' miRNA: 3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 8238 | 0.66 | 0.319417 |
Target: 5'- gCCGUcagcaGCUUGCGCuucaagcGGCCCAG-GUGUu -3' miRNA: 3'- aGGUA-----CGAGCGCGu------CCGGGUCgCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35832 | 0.66 | 0.289695 |
Target: 5'- gCCAUGCUCuacgugGUGCcGGCCguGCuGgGCu -3' miRNA: 3'- aGGUACGAG------CGCGuCCGGguCG-CgCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 13650 | 0.67 | 0.262186 |
Target: 5'- aCCAggGCaaGCGCGacGCCguGCGCGCc -3' miRNA: 3'- aGGUa-CGagCGCGUc-CGGguCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 34264 | 0.67 | 0.275666 |
Target: 5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3' miRNA: 3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 27396 | 0.67 | 0.273609 |
Target: 5'- aUCCAUGUcgcucuuguagucgUCGCGC--GCCUGGCGCa- -3' miRNA: 3'- -AGGUACG--------------AGCGCGucCGGGUCGCGcg -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 21151 | 0.67 | 0.262186 |
Target: 5'- gCCGUGUcCGCGCccuGGUucaaCAGCGCGg -3' miRNA: 3'- aGGUACGaGCGCGu--CCGg---GUCGCGCg -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 37742 | 0.67 | 0.282612 |
Target: 5'- gCCAUuCUCGcCGCGcuaUCCGGCGCGCu -3' miRNA: 3'- aGGUAcGAGC-GCGUcc-GGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 17110 | 0.67 | 0.282612 |
Target: 5'- aUCCcgGCgacgagCGCcggugGCAGGgCCGGC-CGCa -3' miRNA: 3'- -AGGuaCGa-----GCG-----CGUCCgGGUCGcGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 14998 | 0.67 | 0.275666 |
Target: 5'- gCC-UGCggccgccgggCGCGguGcGCCaGGCGCGCg -3' miRNA: 3'- aGGuACGa---------GCGCguC-CGGgUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 12289 | 0.67 | 0.275666 |
Target: 5'- gUCCGacGCg-GUGCAGGCCggCGGCGUGUu -3' miRNA: 3'- -AGGUa-CGagCGCGUCCGG--GUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 18278 | 0.67 | 0.268858 |
Target: 5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3' miRNA: 3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 5732 | 0.67 | 0.275666 |
Target: 5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3' miRNA: 3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 28079 | 0.67 | 0.280513 |
Target: 5'- uUCCAgGacaccgCGaaccaGCAGGCCCggcaguucagccaaGGCGCGCg -3' miRNA: 3'- -AGGUaCga----GCg----CGUCCGGG--------------UCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 9851 | 0.67 | 0.255649 |
Target: 5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3' miRNA: 3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 15878 | 0.67 | 0.262186 |
Target: 5'- aUCUGuUGCUCGgGCacguaggugAGGCCCAGCaGCu- -3' miRNA: 3'- -AGGU-ACGAGCgCG---------UCCGGGUCG-CGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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