miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26509 3' -53.4 NC_005357.1 + 4376 0.66 0.749581
Target:  5'- -gGCGGaugcgCAgccagGCGCCGUCGcGCCGg -3'
miRNA:   3'- aaUGCCa----GUaag--UGCGGUAGCuCGGC- -5'
26509 3' -53.4 NC_005357.1 + 20472 0.66 0.738749
Target:  5'- --uCGGUCGUUcCGCGCacugugcccgCGUUGGGCCu -3'
miRNA:   3'- aauGCCAGUAA-GUGCG----------GUAGCUCGGc -5'
26509 3' -53.4 NC_005357.1 + 5549 0.66 0.738749
Target:  5'- --cUGGUCAaUCACGCgCAuggcuucgaugUCGAGgCCGg -3'
miRNA:   3'- aauGCCAGUaAGUGCG-GU-----------AGCUC-GGC- -5'
26509 3' -53.4 NC_005357.1 + 40617 0.66 0.738749
Target:  5'- --gUGGUCGggUCAUGCgCAaUGGGCCGa -3'
miRNA:   3'- aauGCCAGUa-AGUGCG-GUaGCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 32209 0.66 0.716751
Target:  5'- ---gGGUCAaUUugGaauccgccgaCCAUCGGGCCGg -3'
miRNA:   3'- aaugCCAGUaAGugC----------GGUAGCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 38240 0.66 0.716751
Target:  5'- -cGCGGcCAacaugCcCGCCAUCGAGgCGg -3'
miRNA:   3'- aaUGCCaGUaa---GuGCGGUAGCUCgGC- -5'
26509 3' -53.4 NC_005357.1 + 22782 0.66 0.70561
Target:  5'- --uUGGUCA---ACGCCcugCGGGCCGg -3'
miRNA:   3'- aauGCCAGUaagUGCGGua-GCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 3055 0.67 0.694392
Target:  5'- --cUGGUCAgcagCACGUCAagcgccCGAGCCGc -3'
miRNA:   3'- aauGCCAGUaa--GUGCGGUa-----GCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 34889 0.67 0.660398
Target:  5'- -cGCGGaUCGagCACGCCGcCGAGCg- -3'
miRNA:   3'- aaUGCC-AGUaaGUGCGGUaGCUCGgc -5'
26509 3' -53.4 NC_005357.1 + 17677 0.67 0.648994
Target:  5'- -gGCGGgcugggCGUaggcgaaGCGCCAcUCGGGCCGg -3'
miRNA:   3'- aaUGCCa-----GUAag-----UGCGGU-AGCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 33964 0.67 0.637573
Target:  5'- cUGCGG-CAUcgCAgGCCAccUCGAcGCCGa -3'
miRNA:   3'- aAUGCCaGUAa-GUgCGGU--AGCU-CGGC- -5'
26509 3' -53.4 NC_005357.1 + 7375 0.68 0.614727
Target:  5'- ---aGGUCGUgaaUCACGUCGUUGAcGCCc -3'
miRNA:   3'- aaugCCAGUA---AGUGCGGUAGCU-CGGc -5'
26509 3' -53.4 NC_005357.1 + 36860 0.68 0.591946
Target:  5'- -gGCGGccagCGUUgGCGCCGUCGAuaCCGu -3'
miRNA:   3'- aaUGCCa---GUAAgUGCGGUAGCUc-GGC- -5'
26509 3' -53.4 NC_005357.1 + 31224 0.68 0.580605
Target:  5'- -gGCGGUCAUgCGCGgCAUUGA-CCGc -3'
miRNA:   3'- aaUGCCAGUAaGUGCgGUAGCUcGGC- -5'
26509 3' -53.4 NC_005357.1 + 18514 0.69 0.568183
Target:  5'- cUGCGGUCAUcCAUGCCggUGuugggauuggccuGGCCGa -3'
miRNA:   3'- aAUGCCAGUAaGUGCGGuaGC-------------UCGGC- -5'
26509 3' -53.4 NC_005357.1 + 15592 0.69 0.546895
Target:  5'- cUGCGGaugCAc-CGCGCCAUCG-GCCa -3'
miRNA:   3'- aAUGCCa--GUaaGUGCGGUAGCuCGGc -5'
26509 3' -53.4 NC_005357.1 + 8714 0.69 0.535791
Target:  5'- ---gGGUCGgaugUCGCGCaCcUUGAGCCGg -3'
miRNA:   3'- aaugCCAGUa---AGUGCG-GuAGCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 31921 0.7 0.499755
Target:  5'- -gGCGGUCAgcaguucgucaagagCACgGCCcguUCGGGCCGg -3'
miRNA:   3'- aaUGCCAGUaa-------------GUG-CGGu--AGCUCGGC- -5'
26509 3' -53.4 NC_005357.1 + 20175 0.7 0.481612
Target:  5'- -gACGGcCGgcgaaUACGCCAUCGcGGCCGa -3'
miRNA:   3'- aaUGCCaGUaa---GUGCGGUAGC-UCGGC- -5'
26509 3' -53.4 NC_005357.1 + 22049 0.75 0.253976
Target:  5'- gUUGCGGUCG-UCGCGCUugcUCGGGUCGc -3'
miRNA:   3'- -AAUGCCAGUaAGUGCGGu--AGCUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.