Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 30856 | 0.75 | 0.283519 |
Target: 5'- --uACACgCCCACCGCCCaUCAUCaacgGCCa -3' miRNA: 3'- guuUGUG-GGGUGGCGGG-GGUAGg---CGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 33439 | 0.75 | 0.283519 |
Target: 5'- -cGAgGCCCCGgCGCCCUCGgUCCGCg -3' miRNA: 3'- guUUgUGGGGUgGCGGGGGU-AGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 35944 | 0.76 | 0.261027 |
Target: 5'- uGAGCACCCCGgcCCGagCCCCGgcguggcccaggcccUCCGCCg -3' miRNA: 3'- gUUUGUGGGGU--GGCg-GGGGU---------------AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 113481 | 0.76 | 0.25862 |
Target: 5'- uGAGCGCCCC-CCG-CCUUAUUCGCCg -3' miRNA: 3'- gUUUGUGGGGuGGCgGGGGUAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 36139 | 0.76 | 0.25862 |
Target: 5'- gCAGACuCCgCCuagacucCCGCCUCCAUCCGCUg -3' miRNA: 3'- -GUUUGuGG-GGu------GGCGGGGGUAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 99872 | 0.76 | 0.246854 |
Target: 5'- uGGGCAggUCCCGCCGCCaCCCAcgCCGCa -3' miRNA: 3'- gUUUGU--GGGGUGGCGG-GGGUa-GGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 60811 | 0.76 | 0.235536 |
Target: 5'- ----gACCUCACCGCCUCC-UCCGUCg -3' miRNA: 3'- guuugUGGGGUGGCGGGGGuAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 25087 | 0.78 | 0.176499 |
Target: 5'- ---cCGCCCCACCucgucuugGCCCCCAccUUCGCCg -3' miRNA: 3'- guuuGUGGGGUGG--------CGGGGGU--AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 100554 | 1.11 | 0.000921 |
Target: 5'- cCAAACACCCCACCGCCCCCAUCCGCCg -3' miRNA: 3'- -GUUUGUGGGGUGGCGGGGGUAGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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