Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 99381 | 0.66 | 0.733668 |
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Target: 5'- uGAACGCCCCgagugcugacACgGCUCCUA-CgGCCa -3' miRNA: 3'- gUUUGUGGGG----------UGgCGGGGGUaGgCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 138847 | 0.66 | 0.733668 |
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Target: 5'- aAGGCGCCCCAaaGCCCCguaCUGUg -3' miRNA: 3'- gUUUGUGGGGUggCGGGGguaGGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 31716 | 0.66 | 0.733668 |
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Target: 5'- ---cCAgCCCGCCGCgCCCGaCCuGCUg -3' miRNA: 3'- guuuGUgGGGUGGCGgGGGUaGG-CGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 5988 | 0.66 | 0.743147 |
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Target: 5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3' miRNA: 3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 1365 | 0.66 | 0.743147 |
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Target: 5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3' miRNA: 3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 4009 | 0.66 | 0.743147 |
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Target: 5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3' miRNA: 3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 32353 | 0.66 | 0.752535 |
|
Target: 5'- gGGAuCGCCCgGCCGCuggggccgccaCCCCGaagagCUGCCg -3' miRNA: 3'- gUUU-GUGGGgUGGCG-----------GGGGUa----GGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 33368 | 0.66 | 0.752535 |
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Target: 5'- cCGGACucaCUCGCCGCCguggccggcuaCCCGgcccaggCCGCCg -3' miRNA: 3'- -GUUUGug-GGGUGGCGG-----------GGGUa------GGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 95352 | 0.66 | 0.780066 |
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Target: 5'- aGAGCGCCUCACaCGaugaCCCAUCCa-- -3' miRNA: 3'- gUUUGUGGGGUG-GCgg--GGGUAGGcgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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