Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 43827 | 0.69 | 0.576227 |
Target: 5'- gGAACAgCCgGgCCGCCgCCAagcuugCCGCCg -3' miRNA: 3'- gUUUGUgGGgU-GGCGGgGGUa-----GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 124553 | 0.69 | 0.576227 |
Target: 5'- ---uCACuCCCAUCGCCCCUAgccucaagaaCGCCu -3' miRNA: 3'- guuuGUG-GGGUGGCGGGGGUag--------GCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 3600 | 0.69 | 0.580163 |
Target: 5'- gCGGACGCCCCGCCGCggaggcgcaggagggCCUCGaagaCgGCCu -3' miRNA: 3'- -GUUUGUGGGGUGGCG---------------GGGGUa---GgCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 34479 | 0.69 | 0.586077 |
Target: 5'- -cGACAgCCCuCCgGCCCCCAagCGCa -3' miRNA: 3'- guUUGUgGGGuGG-CGGGGGUagGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 102183 | 0.69 | 0.595959 |
Target: 5'- --cGCACCCCccaaCGCCCCCAuggcuucaaUCaCGUCu -3' miRNA: 3'- guuUGUGGGGug--GCGGGGGU---------AG-GCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 33188 | 0.69 | 0.605867 |
Target: 5'- ----aACCCC-CUGCCCCaCAUCggggaCGCCa -3' miRNA: 3'- guuugUGGGGuGGCGGGG-GUAG-----GCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 98926 | 0.68 | 0.61182 |
Target: 5'- gCAAGCGCUCCGCCugaacGCCCUCugaggcggcaaCGCCg -3' miRNA: 3'- -GUUUGUGGGGUGG-----CGGGGGuag--------GCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 98082 | 0.68 | 0.615792 |
Target: 5'- aCAAGCG-CCUGCCGCaCCUCA-CCGUCu -3' miRNA: 3'- -GUUUGUgGGGUGGCG-GGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 31486 | 0.68 | 0.615792 |
Target: 5'- cCGAGCG-CCCGCCGCggaaCCCCGccaccggccacCCGCCa -3' miRNA: 3'- -GUUUGUgGGGUGGCG----GGGGUa----------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 32429 | 0.68 | 0.615792 |
Target: 5'- ----gGCUCCAgcuucggcgcCCGCUCCCAgCCGCCc -3' miRNA: 3'- guuugUGGGGU----------GGCGGGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 26007 | 0.68 | 0.624735 |
Target: 5'- cCAGGCGgcguuucCCCUACCGCucucCCCCGcUCgGCCu -3' miRNA: 3'- -GUUUGU-------GGGGUGGCG----GGGGU-AGgCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 32289 | 0.68 | 0.625729 |
Target: 5'- -cGGCACUCgcagaaCGCCGCgaaaaCCCCGUCgGCCg -3' miRNA: 3'- guUUGUGGG------GUGGCG-----GGGGUAGgCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 146225 | 0.68 | 0.634677 |
Target: 5'- -uAGCGCCCCguuuagcGCCGCCaCCCAguacgaCUGCg -3' miRNA: 3'- guUUGUGGGG-------UGGCGG-GGGUa-----GGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 55563 | 0.68 | 0.634677 |
Target: 5'- -uGACGCaCCCACucuuccagguCGCCCCCAuauaacaUCCugGCCa -3' miRNA: 3'- guUUGUG-GGGUG----------GCGGGGGU-------AGG--CGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 34002 | 0.68 | 0.649584 |
Target: 5'- ----gGCCCCACCgacucggucccagcaGCCCUCAUCguccuCGCCc -3' miRNA: 3'- guuugUGGGGUGG---------------CGGGGGUAG-----GCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 10548 | 0.68 | 0.65554 |
Target: 5'- gCAAGCuCCCUcuccaGCUGCCCUCGgcccaucggaCCGCCa -3' miRNA: 3'- -GUUUGuGGGG-----UGGCGGGGGUa---------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 7414 | 0.67 | 0.675337 |
Target: 5'- aAAAUACCUaaagCGCCCCCAUCCa-- -3' miRNA: 3'- gUUUGUGGGgug-GCGGGGGUAGGcgg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 33536 | 0.67 | 0.675337 |
Target: 5'- cCGGGgACCagGgCGCCCaggCCGUCCGCCu -3' miRNA: 3'- -GUUUgUGGggUgGCGGG---GGUAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 31770 | 0.67 | 0.682238 |
Target: 5'- -cGACGCUCCGCUcuccaCCCCGgcgguggucaucccUCCGCCg -3' miRNA: 3'- guUUGUGGGGUGGcg---GGGGU--------------AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 10494 | 0.67 | 0.68519 |
Target: 5'- cCGAGCuguUCCC-CCGCCaCgCAgCCGCCg -3' miRNA: 3'- -GUUUGu--GGGGuGGCGG-GgGUaGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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