Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 7291 | 0.66 | 0.771003 |
Target: 5'- --cACACCCC----CCCCCAUgccCCGCCc -3' miRNA: 3'- guuUGUGGGGuggcGGGGGUA---GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 36180 | 0.66 | 0.771003 |
Target: 5'- ----aACCCCGCC-CCgCCC-UCUGCUg -3' miRNA: 3'- guuugUGGGGUGGcGG-GGGuAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 89545 | 0.66 | 0.780066 |
Target: 5'- aAGGCGuCCCCcaacucGCCGgCCCCGU-CGUCg -3' miRNA: 3'- gUUUGU-GGGG------UGGCgGGGGUAgGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5900 | 0.66 | 0.780066 |
Target: 5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3' miRNA: 3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 128200 | 0.66 | 0.780066 |
Target: 5'- gGAACACCCUcuguguuuGuuGCCCCaaccguGUCCGUUu -3' miRNA: 3'- gUUUGUGGGG--------UggCGGGGg-----UAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 126837 | 0.66 | 0.780066 |
Target: 5'- gCAucCACUCCACgGCCCacgCUGUCUGCa -3' miRNA: 3'- -GUuuGUGGGGUGgCGGG---GGUAGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 4474 | 0.66 | 0.780066 |
Target: 5'- --uGCugCugCCGCCGCCCCgGUa-GCCu -3' miRNA: 3'- guuUGugG--GGUGGCGGGGgUAggCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 95352 | 0.66 | 0.780066 |
Target: 5'- aGAGCGCCUCACaCGaugaCCCAUCCa-- -3' miRNA: 3'- gUUUGUGGGGUG-GCgg--GGGUAGGcgg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 33246 | 0.66 | 0.780066 |
Target: 5'- --cACACgCgGCCGCCUCgGUggccaugagCCGCCg -3' miRNA: 3'- guuUGUGgGgUGGCGGGGgUA---------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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