miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 33620 0.74 0.331579
Target:  5'- gAGGCcCUCCugCGCCUCCGcggcggggcgUCCGCCg -3'
miRNA:   3'- gUUUGuGGGGugGCGGGGGU----------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33660 0.67 0.724105
Target:  5'- cCGGACuggACCCCAgCGagauCCCCucucCCGCCu -3'
miRNA:   3'- -GUUUG---UGGGGUgGCg---GGGGua--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 34002 0.68 0.649584
Target:  5'- ----gGCCCCACCgacucggucccagcaGCCCUCAUCguccuCGCCc -3'
miRNA:   3'- guuugUGGGGUGG---------------CGGGGGUAG-----GCGG- -5'
2651 5' -59.8 NC_001491.2 + 34082 0.71 0.489919
Target:  5'- gGAGCcuucagACCCUGCCGCCCCUGUggcccaCCGUCc -3'
miRNA:   3'- gUUUG------UGGGGUGGCGGGGGUA------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 34479 0.69 0.586077
Target:  5'- -cGACAgCCCuCCgGCCCCCAagCGCa -3'
miRNA:   3'- guUUGUgGGGuGG-CGGGGGUagGCGg -5'
2651 5' -59.8 NC_001491.2 + 35776 0.72 0.410121
Target:  5'- --uGCugCCCAUCaccgagGCUCCCcgCCGCCg -3'
miRNA:   3'- guuUGugGGGUGG------CGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 35944 0.76 0.261027
Target:  5'- uGAGCACCCCGgcCCGagCCCCGgcguggcccaggcccUCCGCCg -3'
miRNA:   3'- gUUUGUGGGGU--GGCg-GGGGU---------------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 36139 0.76 0.25862
Target:  5'- gCAGACuCCgCCuagacucCCGCCUCCAUCCGCUg -3'
miRNA:   3'- -GUUUGuGG-GGu------GGCGGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 36180 0.66 0.771003
Target:  5'- ----aACCCCGCC-CCgCCC-UCUGCUg -3'
miRNA:   3'- guuugUGGGGUGGcGG-GGGuAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 37124 0.66 0.752535
Target:  5'- cCGGACuccuCCCCuuCCGCUUCCGgccaCGCCc -3'
miRNA:   3'- -GUUUGu---GGGGu-GGCGGGGGUag--GCGG- -5'
2651 5' -59.8 NC_001491.2 + 42862 0.73 0.369424
Target:  5'- aCGGACACCCU-UCGCCCCUGUCuCGUg -3'
miRNA:   3'- -GUUUGUGGGGuGGCGGGGGUAG-GCGg -5'
2651 5' -59.8 NC_001491.2 + 43827 0.69 0.576227
Target:  5'- gGAACAgCCgGgCCGCCgCCAagcuugCCGCCg -3'
miRNA:   3'- gUUUGUgGGgU-GGCGGgGGUa-----GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 51936 0.67 0.714467
Target:  5'- cCAAGCugaaGCCUgugUACCGCCCCCucuacccguUuuGCCu -3'
miRNA:   3'- -GUUUG----UGGG---GUGGCGGGGGu--------AggCGG- -5'
2651 5' -59.8 NC_001491.2 + 52656 0.67 0.704763
Target:  5'- gAGACGuggUCgCCACCGCCUUCAcCCGCa -3'
miRNA:   3'- gUUUGU---GG-GGUGGCGGGGGUaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 55563 0.68 0.634677
Target:  5'- -uGACGCaCCCACucuuccagguCGCCCCCAuauaacaUCCugGCCa -3'
miRNA:   3'- guUUGUG-GGGUG----------GCGGGGGU-------AGG--CGG- -5'
2651 5' -59.8 NC_001491.2 + 60811 0.76 0.235536
Target:  5'- ----gACCUCACCGCCUCC-UCCGUCg -3'
miRNA:   3'- guuugUGGGGUGGCGGGGGuAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 75968 0.7 0.537258
Target:  5'- uCAAGCAgcagcccucgcUCCCGCCGCgCCg--CCGCCg -3'
miRNA:   3'- -GUUUGU-----------GGGGUGGCGgGGguaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76024 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76056 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76088 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.