Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 118268 | 0.7 | 0.508638 |
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Target: 5'- gCGGACGCgCCagaGCCGCaCCCAaacgCCGCCc -3' miRNA: 3'- -GUUUGUG-GGg--UGGCGgGGGUa---GGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 120210 | 0.73 | 0.385368 |
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Target: 5'- cCAAAUGCCUCGCCauaCCCCCG-CCGCa -3' miRNA: 3'- -GUUUGUGGGGUGGc--GGGGGUaGGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 124553 | 0.69 | 0.576227 |
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Target: 5'- ---uCACuCCCAUCGCCCCUAgccucaagaaCGCCu -3' miRNA: 3'- guuuGUG-GGGUGGCGGGGGUag--------GCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 126837 | 0.66 | 0.780066 |
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Target: 5'- gCAucCACUCCACgGCCCacgCUGUCUGCa -3' miRNA: 3'- -GUuuGUGGGGUGgCGGG---GGUAGGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 128200 | 0.66 | 0.780066 |
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Target: 5'- gGAACACCCUcuguguuuGuuGCCCCaaccguGUCCGUUu -3' miRNA: 3'- gUUUGUGGGG--------UggCGGGGg-----UAGGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 138847 | 0.66 | 0.733668 |
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Target: 5'- aAGGCGCCCCAaaGCCCCguaCUGUg -3' miRNA: 3'- gUUUGUGGGGUggCGGGGguaGGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 146078 | 0.66 | 0.761823 |
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Target: 5'- gCAAACGCgCCUACaCGCCUuuuUCAUCgGCg -3' miRNA: 3'- -GUUUGUG-GGGUG-GCGGG---GGUAGgCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 146225 | 0.68 | 0.634677 |
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Target: 5'- -uAGCGCCCCguuuagcGCCGCCaCCCAguacgaCUGCg -3' miRNA: 3'- guUUGUGGGG-------UGGCGG-GGGUa-----GGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 147471 | 0.7 | 0.49924 |
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Target: 5'- gCAuACGCCCCcauaccCCGCCCCC--UCGCUc -3' miRNA: 3'- -GUuUGUGGGGu-----GGCGGGGGuaGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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