Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 98082 | 0.68 | 0.615792 |
Target: 5'- aCAAGCG-CCUGCCGCaCCUCA-CCGUCu -3' miRNA: 3'- -GUUUGUgGGGUGGCG-GGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 95352 | 0.66 | 0.780066 |
Target: 5'- aGAGCGCCUCACaCGaugaCCCAUCCa-- -3' miRNA: 3'- gUUUGUGGGGUG-GCgg--GGGUAGGcgg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 90090 | 0.74 | 0.31726 |
Target: 5'- uCGAGgGCCCUgagaGCCGCUUCCG-CCGCCg -3' miRNA: 3'- -GUUUgUGGGG----UGGCGGGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 89545 | 0.66 | 0.780066 |
Target: 5'- aAGGCGuCCCCcaacucGCCGgCCCCGU-CGUCg -3' miRNA: 3'- gUUUGU-GGGG------UGGCgGGGGUAgGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 80182 | 0.69 | 0.556644 |
Target: 5'- -cGGCGCCCCGCUGgcgcuccgucgagcuUCCCCGgaagguacgcgagCCGCCa -3' miRNA: 3'- guUUGUGGGGUGGC---------------GGGGGUa------------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76216 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76184 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76152 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76120 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76088 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76056 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76024 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 75968 | 0.7 | 0.537258 |
Target: 5'- uCAAGCAgcagcccucgcUCCCGCCGCgCCg--CCGCCg -3' miRNA: 3'- -GUUUGU-----------GGGGUGGCGgGGguaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 60811 | 0.76 | 0.235536 |
Target: 5'- ----gACCUCACCGCCUCC-UCCGUCg -3' miRNA: 3'- guuugUGGGGUGGCGGGGGuAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 55563 | 0.68 | 0.634677 |
Target: 5'- -uGACGCaCCCACucuuccagguCGCCCCCAuauaacaUCCugGCCa -3' miRNA: 3'- guUUGUG-GGGUG----------GCGGGGGU-------AGG--CGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 52656 | 0.67 | 0.704763 |
Target: 5'- gAGACGuggUCgCCACCGCCUUCAcCCGCa -3' miRNA: 3'- gUUUGU---GG-GGUGGCGGGGGUaGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 51936 | 0.67 | 0.714467 |
Target: 5'- cCAAGCugaaGCCUgugUACCGCCCCCucuacccguUuuGCCu -3' miRNA: 3'- -GUUUG----UGGG---GUGGCGGGGGu--------AggCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 43827 | 0.69 | 0.576227 |
Target: 5'- gGAACAgCCgGgCCGCCgCCAagcuugCCGCCg -3' miRNA: 3'- gUUUGUgGGgU-GGCGGgGGUa-----GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 42862 | 0.73 | 0.369424 |
Target: 5'- aCGGACACCCU-UCGCCCCUGUCuCGUg -3' miRNA: 3'- -GUUUGUGGGGuGGCGGGGGUAG-GCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 37124 | 0.66 | 0.752535 |
Target: 5'- cCGGACuccuCCCCuuCCGCUUCCGgccaCGCCc -3' miRNA: 3'- -GUUUGu---GGGGu-GGCGGGGGUag--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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