miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 36180 0.66 0.771003
Target:  5'- ----aACCCCGCC-CCgCCC-UCUGCUg -3'
miRNA:   3'- guuugUGGGGUGGcGG-GGGuAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 36139 0.76 0.25862
Target:  5'- gCAGACuCCgCCuagacucCCGCCUCCAUCCGCUg -3'
miRNA:   3'- -GUUUGuGG-GGu------GGCGGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 35944 0.76 0.261027
Target:  5'- uGAGCACCCCGgcCCGagCCCCGgcguggcccaggcccUCCGCCg -3'
miRNA:   3'- gUUUGUGGGGU--GGCg-GGGGU---------------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 35776 0.72 0.410121
Target:  5'- --uGCugCCCAUCaccgagGCUCCCcgCCGCCg -3'
miRNA:   3'- guuUGugGGGUGG------CGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 34479 0.69 0.586077
Target:  5'- -cGACAgCCCuCCgGCCCCCAagCGCa -3'
miRNA:   3'- guUUGUgGGGuGG-CGGGGGUagGCGg -5'
2651 5' -59.8 NC_001491.2 + 34082 0.71 0.489919
Target:  5'- gGAGCcuucagACCCUGCCGCCCCUGUggcccaCCGUCc -3'
miRNA:   3'- gUUUG------UGGGGUGGCGGGGGUA------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 34002 0.68 0.649584
Target:  5'- ----gGCCCCACCgacucggucccagcaGCCCUCAUCguccuCGCCc -3'
miRNA:   3'- guuugUGGGGUGG---------------CGGGGGUAG-----GCGG- -5'
2651 5' -59.8 NC_001491.2 + 33660 0.67 0.724105
Target:  5'- cCGGACuggACCCCAgCGagauCCCCucucCCGCCu -3'
miRNA:   3'- -GUUUG---UGGGGUgGCg---GGGGua--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33620 0.74 0.331579
Target:  5'- gAGGCcCUCCugCGCCUCCGcggcggggcgUCCGCCg -3'
miRNA:   3'- gUUUGuGGGGugGCGGGGGU----------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33536 0.67 0.675337
Target:  5'- cCGGGgACCagGgCGCCCaggCCGUCCGCCu -3'
miRNA:   3'- -GUUUgUGGggUgGCGGG---GGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33439 0.75 0.283519
Target:  5'- -cGAgGCCCCGgCGCCCUCGgUCCGCg -3'
miRNA:   3'- guUUgUGGGGUgGCGGGGGU-AGGCGg -5'
2651 5' -59.8 NC_001491.2 + 33368 0.66 0.752535
Target:  5'- cCGGACucaCUCGCCGCCguggccggcuaCCCGgcccaggCCGCCg -3'
miRNA:   3'- -GUUUGug-GGGUGGCGG-----------GGGUa------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33246 0.66 0.780066
Target:  5'- --cACACgCgGCCGCCUCgGUggccaugagCCGCCg -3'
miRNA:   3'- guuUGUGgGgUGGCGGGGgUA---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33188 0.69 0.605867
Target:  5'- ----aACCCC-CUGCCCCaCAUCggggaCGCCa -3'
miRNA:   3'- guuugUGGGGuGGCGGGG-GUAG-----GCGG- -5'
2651 5' -59.8 NC_001491.2 + 32544 0.72 0.43584
Target:  5'- gAGAgGCCCgaACCGCCCgCGgggauggcuucUCCGCCg -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGU-----------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32429 0.68 0.615792
Target:  5'- ----gGCUCCAgcuucggcgcCCGCUCCCAgCCGCCc -3'
miRNA:   3'- guuugUGGGGU----------GGCGGGGGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32353 0.66 0.752535
Target:  5'- gGGAuCGCCCgGCCGCuggggccgccaCCCCGaagagCUGCCg -3'
miRNA:   3'- gUUU-GUGGGgUGGCG-----------GGGGUa----GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32289 0.68 0.625729
Target:  5'- -cGGCACUCgcagaaCGCCGCgaaaaCCCCGUCgGCCg -3'
miRNA:   3'- guUUGUGGG------GUGGCG-----GGGGUAGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 31770 0.67 0.682238
Target:  5'- -cGACGCUCCGCUcuccaCCCCGgcgguggucaucccUCCGCCg -3'
miRNA:   3'- guUUGUGGGGUGGcg---GGGGU--------------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 31716 0.66 0.733668
Target:  5'- ---cCAgCCCGCCGCgCCCGaCCuGCUg -3'
miRNA:   3'- guuuGUgGGGUGGCGgGGGUaGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.