miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 31486 0.68 0.615792
Target:  5'- cCGAGCG-CCCGCCGCggaaCCCCGccaccggccacCCGCCa -3'
miRNA:   3'- -GUUUGUgGGGUGGCG----GGGGUa----------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 31382 0.67 0.724105
Target:  5'- gAGAgGCCCagGCCGCCCgCGUUC-CCu -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 30856 0.75 0.283519
Target:  5'- --uACACgCCCACCGCCCaUCAUCaacgGCCa -3'
miRNA:   3'- guuUGUG-GGGUGGCGGG-GGUAGg---CGG- -5'
2651 5' -59.8 NC_001491.2 + 28571 0.71 0.444617
Target:  5'- aGAACGCCCC-UgGCCCCCGg--GCCa -3'
miRNA:   3'- gUUUGUGGGGuGgCGGGGGUaggCGG- -5'
2651 5' -59.8 NC_001491.2 + 27244 0.72 0.410121
Target:  5'- --cGCGCCCgcccCCGUCCCCGUCC-CCg -3'
miRNA:   3'- guuUGUGGGgu--GGCGGGGGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 27104 0.7 0.527651
Target:  5'- gCGGGCGgCCCggcGCCGCUCCggagcgCGUCCGCUg -3'
miRNA:   3'- -GUUUGUgGGG---UGGCGGGG------GUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 26007 0.68 0.624735
Target:  5'- cCAGGCGgcguuucCCCUACCGCucucCCCCGcUCgGCCu -3'
miRNA:   3'- -GUUUGU-------GGGGUGGCG----GGGGU-AGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 25087 0.78 0.176499
Target:  5'- ---cCGCCCCACCucgucuugGCCCCCAccUUCGCCg -3'
miRNA:   3'- guuuGUGGGGUGG--------CGGGGGU--AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 25022 0.67 0.724105
Target:  5'- -uGACAgCCgCCACCGCCggcaCCGaggucuUCCGCUg -3'
miRNA:   3'- guUUGU-GG-GGUGGCGGg---GGU------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24726 0.7 0.541117
Target:  5'- -cGACGCCgCC-CCGCCCCgGggacccgcgggcgcCCGCCg -3'
miRNA:   3'- guUUGUGG-GGuGGCGGGGgUa-------------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24592 0.67 0.704763
Target:  5'- ----gACCCCGCgCGCCUUCGggaaauucCCGCCc -3'
miRNA:   3'- guuugUGGGGUG-GCGGGGGUa-------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 12853 0.67 0.695001
Target:  5'- gUAAGCGCCaCgCGCCGCCgCC-UgUGCCu -3'
miRNA:   3'- -GUUUGUGG-G-GUGGCGGgGGuAgGCGG- -5'
2651 5' -59.8 NC_001491.2 + 12585 0.67 0.704763
Target:  5'- --cGCAUCCCcCC-CCUCCGacggCCGCCg -3'
miRNA:   3'- guuUGUGGGGuGGcGGGGGUa---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 10548 0.68 0.65554
Target:  5'- gCAAGCuCCCUcuccaGCUGCCCUCGgcccaucggaCCGCCa -3'
miRNA:   3'- -GUUUGuGGGG-----UGGCGGGGGUa---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 10494 0.67 0.68519
Target:  5'- cCGAGCuguUCCC-CCGCCaCgCAgCCGCCg -3'
miRNA:   3'- -GUUUGu--GGGGuGGCGG-GgGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 8683 0.75 0.277121
Target:  5'- --uGCGCCCCGCCGUggcgCCCCGaugugaaCCGCCu -3'
miRNA:   3'- guuUGUGGGGUGGCG----GGGGUa------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 8525 0.67 0.724105
Target:  5'- --cGC-CCCCGgcgggggacCCGUCCCCAcgcUCCaGCCa -3'
miRNA:   3'- guuUGuGGGGU---------GGCGGGGGU---AGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 8482 0.73 0.385368
Target:  5'- gGGACGCCguCCACCaGCCCCCucaucCCGUCc -3'
miRNA:   3'- gUUUGUGG--GGUGG-CGGGGGua---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 7414 0.67 0.675337
Target:  5'- aAAAUACCUaaagCGCCCCCAUCCa-- -3'
miRNA:   3'- gUUUGUGGGgug-GCGGGGGUAGGcgg -5'
2651 5' -59.8 NC_001491.2 + 7291 0.66 0.771003
Target:  5'- --cACACCCC----CCCCCAUgccCCGCCc -3'
miRNA:   3'- guuUGUGGGGuggcGGGGGUA---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.