Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 5988 | 0.66 | 0.743147 |
|
Target: 5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3' miRNA: 3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 5900 | 0.66 | 0.780066 |
|
Target: 5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3' miRNA: 3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 5223 | 0.66 | 0.7609 |
|
Target: 5'- --cGCGuCCCCACCGCCgggugaugaggagCCCGUggcCCGgCg -3' miRNA: 3'- guuUGU-GGGGUGGCGG-------------GGGUA---GGCgG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 4474 | 0.66 | 0.780066 |
|
Target: 5'- --uGCugCugCCGCCGCCCCgGUa-GCCu -3' miRNA: 3'- guuUGugG--GGUGGCGGGGgUAggCGG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 4009 | 0.66 | 0.743147 |
|
Target: 5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3' miRNA: 3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 3600 | 0.69 | 0.580163 |
|
Target: 5'- gCGGACGCCCCGCCGCggaggcgcaggagggCCUCGaagaCgGCCu -3' miRNA: 3'- -GUUUGUGGGGUGGCG---------------GGGGUa---GgCGG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 3053 | 0.72 | 0.427163 |
|
Target: 5'- ----aGCCCCGgCGCCUCCG-CCGCUc -3' miRNA: 3'- guuugUGGGGUgGCGGGGGUaGGCGG- -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 1557 | 0.72 | 0.427163 |
|
Target: 5'- cCGAGgGCUCCACgGCCCCagcgCCGCg -3' miRNA: 3'- -GUUUgUGGGGUGgCGGGGgua-GGCGg -5' |
|||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 1365 | 0.66 | 0.743147 |
|
Target: 5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3' miRNA: 3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home