Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 33660 | 0.67 | 0.724105 |
Target: 5'- cCGGACuggACCCCAgCGagauCCCCucucCCGCCu -3' miRNA: 3'- -GUUUG---UGGGGUgGCg---GGGGua--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 99381 | 0.66 | 0.733668 |
Target: 5'- uGAACGCCCCgagugcugacACgGCUCCUA-CgGCCa -3' miRNA: 3'- gUUUGUGGGG----------UGgCGGGGGUaGgCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 7291 | 0.66 | 0.771003 |
Target: 5'- --cACACCCC----CCCCCAUgccCCGCCc -3' miRNA: 3'- guuUGUGGGGuggcGGGGGUA---GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 36180 | 0.66 | 0.771003 |
Target: 5'- ----aACCCCGCC-CCgCCC-UCUGCUg -3' miRNA: 3'- guuugUGGGGUGGcGG-GGGuAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 4474 | 0.66 | 0.780066 |
Target: 5'- --uGCugCugCCGCCGCCCCgGUa-GCCu -3' miRNA: 3'- guuUGugG--GGUGGCGGGGgUAggCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 33246 | 0.66 | 0.780066 |
Target: 5'- --cACACgCgGCCGCCUCgGUggccaugagCCGCCg -3' miRNA: 3'- guuUGUGgGgUGGCGGGGgUA---------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 126837 | 0.66 | 0.780066 |
Target: 5'- gCAucCACUCCACgGCCCacgCUGUCUGCa -3' miRNA: 3'- -GUuuGUGGGGUGgCGGG---GGUAGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 128200 | 0.66 | 0.780066 |
Target: 5'- gGAACACCCUcuguguuuGuuGCCCCaaccguGUCCGUUu -3' miRNA: 3'- gUUUGUGGGG--------UggCGGGGg-----UAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5900 | 0.66 | 0.780066 |
Target: 5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3' miRNA: 3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 89545 | 0.66 | 0.780066 |
Target: 5'- aAGGCGuCCCCcaacucGCCGgCCCCGU-CGUCg -3' miRNA: 3'- gUUUGU-GGGG------UGGCgGGGGUAgGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 146078 | 0.66 | 0.761823 |
Target: 5'- gCAAACGCgCCUACaCGCCUuuuUCAUCgGCg -3' miRNA: 3'- -GUUUGUG-GGGUG-GCGGG---GGUAGgCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5223 | 0.66 | 0.7609 |
Target: 5'- --cGCGuCCCCACCGCCgggugaugaggagCCCGUggcCCGgCg -3' miRNA: 3'- guuUGU-GGGGUGGCGG-------------GGGUA---GGCgG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 138847 | 0.66 | 0.733668 |
Target: 5'- aAGGCGCCCCAaaGCCCCguaCUGUg -3' miRNA: 3'- gUUUGUGGGGUggCGGGGguaGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 31716 | 0.66 | 0.733668 |
Target: 5'- ---cCAgCCCGCCGCgCCCGaCCuGCUg -3' miRNA: 3'- guuuGUgGGGUGGCGgGGGUaGG-CGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5988 | 0.66 | 0.743147 |
Target: 5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3' miRNA: 3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 1365 | 0.66 | 0.743147 |
Target: 5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3' miRNA: 3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 4009 | 0.66 | 0.743147 |
Target: 5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3' miRNA: 3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 32353 | 0.66 | 0.752535 |
Target: 5'- gGGAuCGCCCgGCCGCuggggccgccaCCCCGaagagCUGCCg -3' miRNA: 3'- gUUU-GUGGGgUGGCG-----------GGGGUa----GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 33368 | 0.66 | 0.752535 |
Target: 5'- cCGGACucaCUCGCCGCCguggccggcuaCCCGgcccaggCCGCCg -3' miRNA: 3'- -GUUUGug-GGGUGGCGG-----------GGGUa------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 37124 | 0.66 | 0.752535 |
Target: 5'- cCGGACuccuCCCCuuCCGCUUCCGgccaCGCCc -3' miRNA: 3'- -GUUUGu---GGGGu-GGCGGGGGUag--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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