miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 33246 0.66 0.780066
Target:  5'- --cACACgCgGCCGCCUCgGUggccaugagCCGCCg -3'
miRNA:   3'- guuUGUGgGgUGGCGGGGgUA---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 126837 0.66 0.780066
Target:  5'- gCAucCACUCCACgGCCCacgCUGUCUGCa -3'
miRNA:   3'- -GUuuGUGGGGUGgCGGG---GGUAGGCGg -5'
2651 5' -59.8 NC_001491.2 + 128200 0.66 0.780066
Target:  5'- gGAACACCCUcuguguuuGuuGCCCCaaccguGUCCGUUu -3'
miRNA:   3'- gUUUGUGGGG--------UggCGGGGg-----UAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 5900 0.66 0.780066
Target:  5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3'
miRNA:   3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 89545 0.66 0.780066
Target:  5'- aAGGCGuCCCCcaacucGCCGgCCCCGU-CGUCg -3'
miRNA:   3'- gUUUGU-GGGG------UGGCgGGGGUAgGCGG- -5'
2651 5' -59.8 NC_001491.2 + 4009 0.66 0.743147
Target:  5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3'
miRNA:   3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 1365 0.66 0.743147
Target:  5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3'
miRNA:   3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5'
2651 5' -59.8 NC_001491.2 + 12853 0.67 0.695001
Target:  5'- gUAAGCGCCaCgCGCCGCCgCC-UgUGCCu -3'
miRNA:   3'- -GUUUGUGG-G-GUGGCGGgGGuAgGCGG- -5'
2651 5' -59.8 NC_001491.2 + 12585 0.67 0.704763
Target:  5'- --cGCAUCCCcCC-CCUCCGacggCCGCCg -3'
miRNA:   3'- guuUGUGGGGuGGcGGGGGUa---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24592 0.67 0.704763
Target:  5'- ----gACCCCGCgCGCCUUCGggaaauucCCGCCc -3'
miRNA:   3'- guuugUGGGGUG-GCGGGGGUa-------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 52656 0.67 0.704763
Target:  5'- gAGACGuggUCgCCACCGCCUUCAcCCGCa -3'
miRNA:   3'- gUUUGU---GG-GGUGGCGGGGGUaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 51936 0.67 0.714467
Target:  5'- cCAAGCugaaGCCUgugUACCGCCCCCucuacccguUuuGCCu -3'
miRNA:   3'- -GUUUG----UGGG---GUGGCGGGGGu--------AggCGG- -5'
2651 5' -59.8 NC_001491.2 + 25022 0.67 0.724105
Target:  5'- -uGACAgCCgCCACCGCCggcaCCGaggucuUCCGCUg -3'
miRNA:   3'- guUUGU-GG-GGUGGCGGg---GGU------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 8525 0.67 0.724105
Target:  5'- --cGC-CCCCGgcgggggacCCGUCCCCAcgcUCCaGCCa -3'
miRNA:   3'- guuUGuGGGGU---------GGCGGGGGU---AGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 31382 0.67 0.724105
Target:  5'- gAGAgGCCCagGCCGCCCgCGUUC-CCu -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 33660 0.67 0.724105
Target:  5'- cCGGACuggACCCCAgCGagauCCCCucucCCGCCu -3'
miRNA:   3'- -GUUUG---UGGGGUgGCg---GGGGua--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 99381 0.66 0.733668
Target:  5'- uGAACGCCCCgagugcugacACgGCUCCUA-CgGCCa -3'
miRNA:   3'- gUUUGUGGGG----------UGgCGGGGGUaGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 138847 0.66 0.733668
Target:  5'- aAGGCGCCCCAaaGCCCCguaCUGUg -3'
miRNA:   3'- gUUUGUGGGGUggCGGGGguaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 31716 0.66 0.733668
Target:  5'- ---cCAgCCCGCCGCgCCCGaCCuGCUg -3'
miRNA:   3'- guuuGUgGGGUGGCGgGGGUaGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 5988 0.66 0.743147
Target:  5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3'
miRNA:   3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.