Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2651 | 5' | -59.8 | NC_001491.2 | + | 51936 | 0.67 | 0.714467 |
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Target: 5'- cCAAGCugaaGCCUgugUACCGCCCCCucuacccguUuuGCCu -3' miRNA: 3'- -GUUUG----UGGG---GUGGCGGGGGu--------AggCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 52656 | 0.67 | 0.704763 |
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Target: 5'- gAGACGuggUCgCCACCGCCUUCAcCCGCa -3' miRNA: 3'- gUUUGU---GG-GGUGGCGGGGGUaGGCGg -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 24592 | 0.67 | 0.704763 |
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Target: 5'- ----gACCCCGCgCGCCUUCGggaaauucCCGCCc -3' miRNA: 3'- guuugUGGGGUG-GCGGGGGUa-------GGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 12585 | 0.67 | 0.704763 |
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Target: 5'- --cGCAUCCCcCC-CCUCCGacggCCGCCg -3' miRNA: 3'- guuUGUGGGGuGGcGGGGGUa---GGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 12853 | 0.67 | 0.695001 |
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Target: 5'- gUAAGCGCCaCgCGCCGCCgCC-UgUGCCu -3' miRNA: 3'- -GUUUGUGG-G-GUGGCGGgGGuAgGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 10494 | 0.67 | 0.68519 |
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Target: 5'- cCGAGCuguUCCC-CCGCCaCgCAgCCGCCg -3' miRNA: 3'- -GUUUGu--GGGGuGGCGG-GgGUaGGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 31770 | 0.67 | 0.682238 |
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Target: 5'- -cGACGCUCCGCUcuccaCCCCGgcgguggucaucccUCCGCCg -3' miRNA: 3'- guUUGUGGGGUGGcg---GGGGU--------------AGGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 33536 | 0.67 | 0.675337 |
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Target: 5'- cCGGGgACCagGgCGCCCaggCCGUCCGCCu -3' miRNA: 3'- -GUUUgUGGggUgGCGGG---GGUAGGCGG- -5' |
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| 2651 | 5' | -59.8 | NC_001491.2 | + | 33188 | 0.69 | 0.605867 |
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Target: 5'- ----aACCCC-CUGCCCCaCAUCggggaCGCCa -3' miRNA: 3'- guuugUGGGGuGGCGGGG-GUAG-----GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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