miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 25022 0.67 0.724105
Target:  5'- -uGACAgCCgCCACCGCCggcaCCGaggucuUCCGCUg -3'
miRNA:   3'- guUUGU-GG-GGUGGCGGg---GGU------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 8525 0.67 0.724105
Target:  5'- --cGC-CCCCGgcgggggacCCGUCCCCAcgcUCCaGCCa -3'
miRNA:   3'- guuUGuGGGGU---------GGCGGGGGU---AGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 31382 0.67 0.724105
Target:  5'- gAGAgGCCCagGCCGCCCgCGUUC-CCu -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 33660 0.67 0.724105
Target:  5'- cCGGACuggACCCCAgCGagauCCCCucucCCGCCu -3'
miRNA:   3'- -GUUUG---UGGGGUgGCg---GGGGua--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 51936 0.67 0.714467
Target:  5'- cCAAGCugaaGCCUgugUACCGCCCCCucuacccguUuuGCCu -3'
miRNA:   3'- -GUUUG----UGGG---GUGGCGGGGGu--------AggCGG- -5'
2651 5' -59.8 NC_001491.2 + 12585 0.67 0.704763
Target:  5'- --cGCAUCCCcCC-CCUCCGacggCCGCCg -3'
miRNA:   3'- guuUGUGGGGuGGcGGGGGUa---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24592 0.67 0.704763
Target:  5'- ----gACCCCGCgCGCCUUCGggaaauucCCGCCc -3'
miRNA:   3'- guuugUGGGGUG-GCGGGGGUa-------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 52656 0.67 0.704763
Target:  5'- gAGACGuggUCgCCACCGCCUUCAcCCGCa -3'
miRNA:   3'- gUUUGU---GG-GGUGGCGGGGGUaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 12853 0.67 0.695001
Target:  5'- gUAAGCGCCaCgCGCCGCCgCC-UgUGCCu -3'
miRNA:   3'- -GUUUGUGG-G-GUGGCGGgGGuAgGCGG- -5'
2651 5' -59.8 NC_001491.2 + 10494 0.67 0.68519
Target:  5'- cCGAGCuguUCCC-CCGCCaCgCAgCCGCCg -3'
miRNA:   3'- -GUUUGu--GGGGuGGCGG-GgGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 31770 0.67 0.682238
Target:  5'- -cGACGCUCCGCUcuccaCCCCGgcgguggucaucccUCCGCCg -3'
miRNA:   3'- guUUGUGGGGUGGcg---GGGGU--------------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 7414 0.67 0.675337
Target:  5'- aAAAUACCUaaagCGCCCCCAUCCa-- -3'
miRNA:   3'- gUUUGUGGGgug-GCGGGGGUAGGcgg -5'
2651 5' -59.8 NC_001491.2 + 33536 0.67 0.675337
Target:  5'- cCGGGgACCagGgCGCCCaggCCGUCCGCCu -3'
miRNA:   3'- -GUUUgUGGggUgGCGGG---GGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 10548 0.68 0.65554
Target:  5'- gCAAGCuCCCUcuccaGCUGCCCUCGgcccaucggaCCGCCa -3'
miRNA:   3'- -GUUUGuGGGG-----UGGCGGGGGUa---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 34002 0.68 0.649584
Target:  5'- ----gGCCCCACCgacucggucccagcaGCCCUCAUCguccuCGCCc -3'
miRNA:   3'- guuugUGGGGUGG---------------CGGGGGUAG-----GCGG- -5'
2651 5' -59.8 NC_001491.2 + 55563 0.68 0.634677
Target:  5'- -uGACGCaCCCACucuuccagguCGCCCCCAuauaacaUCCugGCCa -3'
miRNA:   3'- guUUGUG-GGGUG----------GCGGGGGU-------AGG--CGG- -5'
2651 5' -59.8 NC_001491.2 + 146225 0.68 0.634677
Target:  5'- -uAGCGCCCCguuuagcGCCGCCaCCCAguacgaCUGCg -3'
miRNA:   3'- guUUGUGGGG-------UGGCGG-GGGUa-----GGCGg -5'
2651 5' -59.8 NC_001491.2 + 32289 0.68 0.625729
Target:  5'- -cGGCACUCgcagaaCGCCGCgaaaaCCCCGUCgGCCg -3'
miRNA:   3'- guUUGUGGG------GUGGCG-----GGGGUAGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 26007 0.68 0.624735
Target:  5'- cCAGGCGgcguuucCCCUACCGCucucCCCCGcUCgGCCu -3'
miRNA:   3'- -GUUUGU-------GGGGUGGCG----GGGGU-AGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 31486 0.68 0.615792
Target:  5'- cCGAGCG-CCCGCCGCggaaCCCCGccaccggccacCCGCCa -3'
miRNA:   3'- -GUUUGUgGGGUGGCG----GGGGUa----------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.