miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26510 3' -55.8 NC_005357.1 + 35333 0.66 0.565339
Target:  5'- cAUCGUGCGCguggGCGCgCCGUGgguaggccGCGGc -3'
miRNA:   3'- -UAGCGCGCGa---CGUGaGGUACa-------UGCUu -5'
26510 3' -55.8 NC_005357.1 + 19823 0.66 0.531845
Target:  5'- -cCGCGCGCgggGCGCUUCuucGUGCa-- -3'
miRNA:   3'- uaGCGCGCGa--CGUGAGGua-CAUGcuu -5'
26510 3' -55.8 NC_005357.1 + 17803 0.66 0.520836
Target:  5'- -gCGCGCGCaGUAUUCCGccUGcACGGAa -3'
miRNA:   3'- uaGCGCGCGaCGUGAGGU--ACaUGCUU- -5'
26510 3' -55.8 NC_005357.1 + 19903 0.67 0.499094
Target:  5'- -gCGCGCGCUGCGCgugCUcgcUGCGGGg -3'
miRNA:   3'- uaGCGCGCGACGUGa--GGuacAUGCUU- -5'
26510 3' -55.8 NC_005357.1 + 1086 0.67 0.467271
Target:  5'- --gGCGCGC-GUACUUCAUGUugGc- -3'
miRNA:   3'- uagCGCGCGaCGUGAGGUACAugCuu -5'
26510 3' -55.8 NC_005357.1 + 38927 0.68 0.42654
Target:  5'- uUCuCGCGCUGCGCUCUG-GUACa-- -3'
miRNA:   3'- uAGcGCGCGACGUGAGGUaCAUGcuu -5'
26510 3' -55.8 NC_005357.1 + 17352 0.68 0.42654
Target:  5'- --gGCGCGCUGCGCUggGUG-GCGAu -3'
miRNA:   3'- uagCGCGCGACGUGAggUACaUGCUu -5'
26510 3' -55.8 NC_005357.1 + 26049 0.7 0.334632
Target:  5'- -cCGCGCgGCgggcGCGCUCCAUGcgcucgGCGAAc -3'
miRNA:   3'- uaGCGCG-CGa---CGUGAGGUACa-----UGCUU- -5'
26510 3' -55.8 NC_005357.1 + 14646 0.7 0.31808
Target:  5'- -gCGCgGCGC-GCGCUUCGUGUACGu- -3'
miRNA:   3'- uaGCG-CGCGaCGUGAGGUACAUGCuu -5'
26510 3' -55.8 NC_005357.1 + 29415 0.75 0.14806
Target:  5'- cGUCGCcacuGCGCUGCGCggCC-UGUACGAGa -3'
miRNA:   3'- -UAGCG----CGCGACGUGa-GGuACAUGCUU- -5'
26510 3' -55.8 NC_005357.1 + 20781 0.79 0.084913
Target:  5'- cAUCGCGCgGCUGCACgUCCAUGU-CGGu -3'
miRNA:   3'- -UAGCGCG-CGACGUG-AGGUACAuGCUu -5'
26510 3' -55.8 NC_005357.1 + 20074 1.04 0.001071
Target:  5'- uAUCGCGCGCUGCACUCCAUGUACGAAg -3'
miRNA:   3'- -UAGCGCGCGACGUGAGGUACAUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.