miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26510 5' -57.3 NC_005357.1 + 36912 0.66 0.539129
Target:  5'- uGggCGGCcgGCGuGCCuacgacuuuGGCAGCAUCGc- -3'
miRNA:   3'- gCaaGCCG--UGC-CGG---------UCGUCGUAGCac -5'
26510 5' -57.3 NC_005357.1 + 33640 0.66 0.539129
Target:  5'- ---cCGGCGCGGCCGaCc-CAUCGUGc -3'
miRNA:   3'- gcaaGCCGUGCCGGUcGucGUAGCAC- -5'
26510 5' -57.3 NC_005357.1 + 8105 0.66 0.539129
Target:  5'- gCGUUUGaggcccugcaccGCGCGGCCGGC-GUugGUUGUGg -3'
miRNA:   3'- -GCAAGC------------CGUGCCGGUCGuCG--UAGCAC- -5'
26510 5' -57.3 NC_005357.1 + 9224 0.66 0.528398
Target:  5'- aCGUucugCGGCGCGcCCGGCGGCAg---- -3'
miRNA:   3'- -GCAa---GCCGUGCcGGUCGUCGUagcac -5'
26510 5' -57.3 NC_005357.1 + 21288 0.66 0.517747
Target:  5'- gGcgCGGacacgGCGGCCaagcugGGCAGCGUCGa- -3'
miRNA:   3'- gCaaGCCg----UGCCGG------UCGUCGUAGCac -5'
26510 5' -57.3 NC_005357.1 + 13129 0.66 0.517747
Target:  5'- aGUgcUgGGCAagGGCCAGCAGUucGUCGc- -3'
miRNA:   3'- gCA--AgCCGUg-CCGGUCGUCG--UAGCac -5'
26510 5' -57.3 NC_005357.1 + 32936 0.66 0.517747
Target:  5'- uGUUCGGcCAgGGCgaccaCGGCuGCGUCGa- -3'
miRNA:   3'- gCAAGCC-GUgCCG-----GUCGuCGUAGCac -5'
26510 5' -57.3 NC_005357.1 + 31898 0.66 0.514569
Target:  5'- gCGUggCGGCggaaagcguggccgGCGGUCAGCAGU-UCGUc -3'
miRNA:   3'- -GCAa-GCCG--------------UGCCGGUCGUCGuAGCAc -5'
26510 5' -57.3 NC_005357.1 + 39679 0.66 0.507183
Target:  5'- aGUggUCGGCACGcCCgAGCAGCGcCGg- -3'
miRNA:   3'- gCA--AGCCGUGCcGG-UCGUCGUaGCac -5'
26510 5' -57.3 NC_005357.1 + 38081 0.66 0.496711
Target:  5'- ---cCGGCaacgcaACGGCCAGCAucaaggcugGCAccaUCGUGg -3'
miRNA:   3'- gcaaGCCG------UGCCGGUCGU---------CGU---AGCAC- -5'
26510 5' -57.3 NC_005357.1 + 29474 0.66 0.496711
Target:  5'- aCGaa-GcGCGCGGCCAGUuccGCGUCGg- -3'
miRNA:   3'- -GCaagC-CGUGCCGGUCGu--CGUAGCac -5'
26510 5' -57.3 NC_005357.1 + 28110 0.66 0.496711
Target:  5'- aGUUCagccaaGGCGCGcGCCAGUucAGCAacgaCGUGg -3'
miRNA:   3'- gCAAG------CCGUGC-CGGUCG--UCGUa---GCAC- -5'
26510 5' -57.3 NC_005357.1 + 28572 0.66 0.49567
Target:  5'- ---gCGGCGCgcacgucGGCCaccGGCAGCGUgGUGu -3'
miRNA:   3'- gcaaGCCGUG-------CCGG---UCGUCGUAgCAC- -5'
26510 5' -57.3 NC_005357.1 + 12291 0.67 0.486339
Target:  5'- cCGacgCGGUGCaGGCCGGCGGCGUg--- -3'
miRNA:   3'- -GCaa-GCCGUG-CCGGUCGUCGUAgcac -5'
26510 5' -57.3 NC_005357.1 + 1751 0.67 0.47607
Target:  5'- cCGggCGGuCAUGGCCGGCcugcgccuggcGCGUCGg- -3'
miRNA:   3'- -GCaaGCC-GUGCCGGUCGu----------CGUAGCac -5'
26510 5' -57.3 NC_005357.1 + 5111 0.67 0.47607
Target:  5'- gCGUcCGGUGCGGCUGGCGccguugaacuGCAaCGUGc -3'
miRNA:   3'- -GCAaGCCGUGCCGGUCGU----------CGUaGCAC- -5'
26510 5' -57.3 NC_005357.1 + 9878 0.67 0.465909
Target:  5'- uCGgagCGGCAUcGCCggcGGCAGCAUCcUGg -3'
miRNA:   3'- -GCaa-GCCGUGcCGG---UCGUCGUAGcAC- -5'
26510 5' -57.3 NC_005357.1 + 15090 0.67 0.462883
Target:  5'- --gUCGGCcCGGCCuacguggaaAGCaacgcgcgccugugGGCGUCGUGg -3'
miRNA:   3'- gcaAGCCGuGCCGG---------UCG--------------UCGUAGCAC- -5'
26510 5' -57.3 NC_005357.1 + 20016 0.67 0.449891
Target:  5'- --cUCGGCAUGGCgcgccugcaucacaGGCAGCAUCuUGu -3'
miRNA:   3'- gcaAGCCGUGCCGg-------------UCGUCGUAGcAC- -5'
26510 5' -57.3 NC_005357.1 + 13869 0.67 0.445934
Target:  5'- aCGUgCGcGCcgcgAUGGCCGGCGGCcgcaagGUCGUGc -3'
miRNA:   3'- -GCAaGC-CG----UGCCGGUCGUCG------UAGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.