miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26511 5' -54.3 NC_005357.1 + 37197 0.74 0.2514
Target:  5'- gGCCGAacuGCGCGAAcuGCUGGGUauccgGUUGCa -3'
miRNA:   3'- gUGGCU---CGCGCUUu-CGACCUA-----CAGCG- -5'
26511 5' -54.3 NC_005357.1 + 31508 0.68 0.593562
Target:  5'- cCGCCG-GCGUGcu-GCUGGGccUCGCu -3'
miRNA:   3'- -GUGGCuCGCGCuuuCGACCUacAGCG- -5'
26511 5' -54.3 NC_005357.1 + 39162 0.67 0.603672
Target:  5'- gGCCGAcuaucugGCGCGGAAGCUGaAUccCGCc -3'
miRNA:   3'- gUGGCU-------CGCGCUUUCGACcUAcaGCG- -5'
26511 5' -54.3 NC_005357.1 + 25833 0.67 0.627331
Target:  5'- cCGCCGuuGGCGcCGGucaguuccauGCUGGucuUGUCGCc -3'
miRNA:   3'- -GUGGC--UCGC-GCUuu--------CGACCu--ACAGCG- -5'
26511 5' -54.3 NC_005357.1 + 16772 0.66 0.694688
Target:  5'- cCACCGGcGaCGUGAAGGCgaug-GUCGCc -3'
miRNA:   3'- -GUGGCU-C-GCGCUUUCGaccuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 12724 0.66 0.70576
Target:  5'- uCGCCcGGCcCGuugguGCUGGGUGcCGCg -3'
miRNA:   3'- -GUGGcUCGcGCuuu--CGACCUACaGCG- -5'
26511 5' -54.3 NC_005357.1 + 38042 0.66 0.70576
Target:  5'- gGCCcGGCGCGAcGGCgccUGGcUG-CGCa -3'
miRNA:   3'- gUGGcUCGCGCUuUCG---ACCuACaGCG- -5'
26511 5' -54.3 NC_005357.1 + 32469 0.66 0.716757
Target:  5'- uGCCGAG-GUGggGGCggccGAUG-CGCc -3'
miRNA:   3'- gUGGCUCgCGCuuUCGac--CUACaGCG- -5'
26511 5' -54.3 NC_005357.1 + 39851 0.66 0.716757
Target:  5'- gGCgGcaAGCGCGcgcacgcGCUGGGccgUGUCGCa -3'
miRNA:   3'- gUGgC--UCGCGCuuu----CGACCU---ACAGCG- -5'
26511 5' -54.3 NC_005357.1 + 28620 0.68 0.593562
Target:  5'- aACCGGGCGCGGAugaGGCcGGccaGUucCGCg -3'
miRNA:   3'- gUGGCUCGCGCUU---UCGaCCua-CA--GCG- -5'
26511 5' -54.3 NC_005357.1 + 25754 0.69 0.53808
Target:  5'- aCGCUGGGCGCGcu-GCUGGgcGgcgGCa -3'
miRNA:   3'- -GUGGCUCGCGCuuuCGACCuaCag-CG- -5'
26511 5' -54.3 NC_005357.1 + 38576 0.74 0.264983
Target:  5'- aGCUGGGCgGCGAGGugcgcaaagugcGCUGGAUugGUCGCa -3'
miRNA:   3'- gUGGCUCG-CGCUUU------------CGACCUA--CAGCG- -5'
26511 5' -54.3 NC_005357.1 + 14046 0.74 0.271287
Target:  5'- aAUgGAGCGCGAAAGCccggcgcUGGgcGUCGUu -3'
miRNA:   3'- gUGgCUCGCGCUUUCG-------ACCuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 24906 0.72 0.359033
Target:  5'- gCGCCGGaaugaacguGCGCGAcuuGGGCUGGAUGaUGUc -3'
miRNA:   3'- -GUGGCU---------CGCGCU---UUCGACCUACaGCG- -5'
26511 5' -54.3 NC_005357.1 + 36091 0.72 0.367848
Target:  5'- gGCCGGGCGCuuuGGCUGGGgcggaaCGCg -3'
miRNA:   3'- gUGGCUCGCGcuuUCGACCUaca---GCG- -5'
26511 5' -54.3 NC_005357.1 + 14387 0.71 0.395172
Target:  5'- gCGCCGcggaacguaGGCGUagcGAAGCUGGgcGUCGCc -3'
miRNA:   3'- -GUGGC---------UCGCGc--UUUCGACCuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 34514 0.7 0.474067
Target:  5'- aCGCCGAGCGCaacGAGcAGCUGGcgaucuaCGCa -3'
miRNA:   3'- -GUGGCUCGCG---CUU-UCGACCuaca---GCG- -5'
26511 5' -54.3 NC_005357.1 + 15156 0.69 0.484485
Target:  5'- gCGCCcAGgGCGAcGGCUG-AUGUUGCu -3'
miRNA:   3'- -GUGGcUCgCGCUuUCGACcUACAGCG- -5'
26511 5' -54.3 NC_005357.1 + 37504 0.69 0.495011
Target:  5'- -cCCGAGgGCaaGAAGCUGGucGUCGCc -3'
miRNA:   3'- guGGCUCgCGc-UUUCGACCuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 41289 0.66 0.721132
Target:  5'- cCGCCGuAGCGCGAGcuaacgguuacaccgGGCc-GAUG-CGCg -3'
miRNA:   3'- -GUGGC-UCGCGCUU---------------UCGacCUACaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.