miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26511 5' -54.3 NC_005357.1 + 35801 0.69 0.505639
Target:  5'- gGCCaAGCGCGcGAAGCUGGcgG-CGg -3'
miRNA:   3'- gUGGcUCGCGC-UUUCGACCuaCaGCg -5'
26511 5' -54.3 NC_005357.1 + 6445 0.69 0.505639
Target:  5'- cCACCGccCGCGAAGGCgucGccGUCGCg -3'
miRNA:   3'- -GUGGCucGCGCUUUCGac-CuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 37504 0.69 0.495011
Target:  5'- -cCCGAGgGCaaGAAGCUGGucGUCGCc -3'
miRNA:   3'- guGGCUCgCGc-UUUCGACCuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 34640 0.69 0.495011
Target:  5'- uGCUGGGCgGCGAAGGgUGGAcGccggCGCa -3'
miRNA:   3'- gUGGCUCG-CGCUUUCgACCUaCa---GCG- -5'
26511 5' -54.3 NC_005357.1 + 15156 0.69 0.484485
Target:  5'- gCGCCcAGgGCGAcGGCUG-AUGUUGCu -3'
miRNA:   3'- -GUGGcUCgCGCUuUCGACcUACAGCG- -5'
26511 5' -54.3 NC_005357.1 + 34514 0.7 0.474067
Target:  5'- aCGCCGAGCGCaacGAGcAGCUGGcgaucuaCGCa -3'
miRNA:   3'- -GUGGCUCGCG---CUU-UCGACCuaca---GCG- -5'
26511 5' -54.3 NC_005357.1 + 24321 0.7 0.443514
Target:  5'- gUACCGgacGGCGCGAAGGCguccUGGu--UCGCg -3'
miRNA:   3'- -GUGGC---UCGCGCUUUCG----ACCuacAGCG- -5'
26511 5' -54.3 NC_005357.1 + 29817 0.71 0.423773
Target:  5'- uGCCGAGCGCGucGGCgccAUG-CGCa -3'
miRNA:   3'- gUGGCUCGCGCuuUCGaccUACaGCG- -5'
26511 5' -54.3 NC_005357.1 + 14387 0.71 0.395172
Target:  5'- gCGCCGcggaacguaGGCGUagcGAAGCUGGgcGUCGCc -3'
miRNA:   3'- -GUGGC---------UCGCGc--UUUCGACCuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 13053 0.72 0.377714
Target:  5'- gCGCCGAGUcCGAGGGCUGGGgcaaggccaccggCGCg -3'
miRNA:   3'- -GUGGCUCGcGCUUUCGACCUaca----------GCG- -5'
26511 5' -54.3 NC_005357.1 + 36091 0.72 0.367848
Target:  5'- gGCCGGGCGCuuuGGCUGGGgcggaaCGCg -3'
miRNA:   3'- gUGGCUCGCGcuuUCGACCUaca---GCG- -5'
26511 5' -54.3 NC_005357.1 + 24906 0.72 0.359033
Target:  5'- gCGCCGGaaugaacguGCGCGAcuuGGGCUGGAUGaUGUc -3'
miRNA:   3'- -GUGGCU---------CGCGCU---UUCGACCUACaGCG- -5'
26511 5' -54.3 NC_005357.1 + 27714 0.73 0.325269
Target:  5'- cUACCGGGCGC-AGGGCaUGGAgg-CGCa -3'
miRNA:   3'- -GUGGCUCGCGcUUUCG-ACCUacaGCG- -5'
26511 5' -54.3 NC_005357.1 + 14046 0.74 0.271287
Target:  5'- aAUgGAGCGCGAAAGCccggcgcUGGgcGUCGUu -3'
miRNA:   3'- gUGgCUCGCGCUUUCG-------ACCuaCAGCG- -5'
26511 5' -54.3 NC_005357.1 + 38576 0.74 0.264983
Target:  5'- aGCUGGGCgGCGAGGugcgcaaagugcGCUGGAUugGUCGCa -3'
miRNA:   3'- gUGGCUCG-CGCUUU------------CGACCUA--CAGCG- -5'
26511 5' -54.3 NC_005357.1 + 37197 0.74 0.2514
Target:  5'- gGCCGAacuGCGCGAAcuGCUGGGUauccgGUUGCa -3'
miRNA:   3'- gUGGCU---CGCGCUUu-CGACCUA-----CAGCG- -5'
26511 5' -54.3 NC_005357.1 + 17346 0.77 0.171798
Target:  5'- gCGCCGGGCGCGcugcGCUGGGUGgcgaUGCu -3'
miRNA:   3'- -GUGGCUCGCGCuuu-CGACCUACa---GCG- -5'
26511 5' -54.3 NC_005357.1 + 19767 1.12 0.000539
Target:  5'- gCACCGAGCGCGAAAGCUGGAUGUCGCa -3'
miRNA:   3'- -GUGGCUCGCGCUUUCGACCUACAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.