Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26512 | 3' | -55.6 | NC_005357.1 | + | 38389 | 0.66 | 0.597891 |
Target: 5'- -cGCccGGCuGC-GCUCGACccgCGCGGCAu -3' miRNA: 3'- guCG--UCGuUGaCGAGCUGa--GCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 29945 | 0.66 | 0.597891 |
Target: 5'- cCAGuCAGguGgUGCUUGuCgUCGCGGCGc -3' miRNA: 3'- -GUC-GUCguUgACGAGCuG-AGCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 3564 | 0.66 | 0.597891 |
Target: 5'- -cGCAGCAGCggGCUgGGCguacaccgaucCGCGGCc -3' miRNA: 3'- guCGUCGUUGa-CGAgCUGa----------GCGUCGu -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 1141 | 0.66 | 0.575259 |
Target: 5'- gAGCAGCGGCcGUUUGcGCUCGCcGUc -3' miRNA: 3'- gUCGUCGUUGaCGAGC-UGAGCGuCGu -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 23659 | 0.66 | 0.575259 |
Target: 5'- gGGCAGCAACUGCaccaggCGACcCuCGGUc -3' miRNA: 3'- gUCGUCGUUGACGa-----GCUGaGcGUCGu -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 36913 | 0.66 | 0.575259 |
Target: 5'- gGGCGGcCGGCgUGCcuaCGACUUugGCAGCAu -3' miRNA: 3'- gUCGUC-GUUG-ACGa--GCUGAG--CGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 18708 | 0.66 | 0.552827 |
Target: 5'- uCAGCAGCAGC-GCaUCGguACg-GCGGCAc -3' miRNA: 3'- -GUCGUCGUUGaCG-AGC--UGagCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 5664 | 0.67 | 0.519704 |
Target: 5'- cCAGCGGUAGCUGUUCaGCaaGCuGCu -3' miRNA: 3'- -GUCGUCGUUGACGAGcUGagCGuCGu -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 12521 | 0.67 | 0.508834 |
Target: 5'- aCAGCgcgucgAGguGCUGCUCGAC-CuCGGCGu -3' miRNA: 3'- -GUCG------UCguUGACGAGCUGaGcGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 16224 | 0.67 | 0.508834 |
Target: 5'- gAGCAGCAGCaaCUCGGugaGCGGCAc -3' miRNA: 3'- gUCGUCGUUGacGAGCUgagCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 26122 | 0.67 | 0.508834 |
Target: 5'- -uGcCGGCAugUGUUCG--UCGCGGCAg -3' miRNA: 3'- guC-GUCGUugACGAGCugAGCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 31083 | 0.67 | 0.508834 |
Target: 5'- -uGguGCcGCUGCUCacCUCGguGCAg -3' miRNA: 3'- guCguCGuUGACGAGcuGAGCguCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 39449 | 0.67 | 0.491646 |
Target: 5'- uCGGCGGCAACUGgaacaacacgucgaaCUCGGguuCUCGCGcuGCGa -3' miRNA: 3'- -GUCGUCGUUGAC---------------GAGCU---GAGCGU--CGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 19896 | 0.67 | 0.48739 |
Target: 5'- cCGGCAcGCGcgcGCUGCgCGuGCUCGCuGCGg -3' miRNA: 3'- -GUCGU-CGU---UGACGaGC-UGAGCGuCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 4595 | 0.67 | 0.48739 |
Target: 5'- aGGCgAGgAACUGCUCGGC-CuCGGCGa -3' miRNA: 3'- gUCG-UCgUUGACGAGCUGaGcGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 27165 | 0.67 | 0.476829 |
Target: 5'- aCAGCGGgCAACUGUUUG---UGCGGCAg -3' miRNA: 3'- -GUCGUC-GUUGACGAGCugaGCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 34047 | 0.67 | 0.476829 |
Target: 5'- gGGCGGCGAUU-CUCGAagauucgagCGCGGCGg -3' miRNA: 3'- gUCGUCGUUGAcGAGCUga-------GCGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 10077 | 0.67 | 0.476829 |
Target: 5'- uCGGCGGCGACcGCagCGACcuggGCGGCGg -3' miRNA: 3'- -GUCGUCGUUGaCGa-GCUGag--CGUCGU- -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 20123 | 0.68 | 0.466383 |
Target: 5'- cCAGCAGCAucguGCUGCcCGACUucgaCGCcGUg -3' miRNA: 3'- -GUCGUCGU----UGACGaGCUGA----GCGuCGu -5' |
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26512 | 3' | -55.6 | NC_005357.1 | + | 27327 | 0.68 | 0.466383 |
Target: 5'- aGGCAGCuauuACgGCgcgCGG-UCGCAGCAa -3' miRNA: 3'- gUCGUCGu---UGaCGa--GCUgAGCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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