miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26512 5' -57.1 NC_005357.1 + 18986 0.66 0.514431
Target:  5'- -aCGCGCGAACCAuccGCAuCCCGGc -3'
miRNA:   3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 24647 0.66 0.514431
Target:  5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3'
miRNA:   3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 31354 0.66 0.514431
Target:  5'- -gCGCGCGAcCCGGAcacguucgAGCAGUUCGu- -3'
miRNA:   3'- ugGCGCGCUuGGUCU--------UCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 6400 0.66 0.503715
Target:  5'- gGCCgGCcCGGugUAGucGCGGCCCAu- -3'
miRNA:   3'- -UGG-CGcGCUugGUCuuCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 3461 0.66 0.500519
Target:  5'- cGCCGCgcgccccgaagaacGCGAACgAGAAcGaCGGCCCGc- -3'
miRNA:   3'- -UGGCG--------------CGCUUGgUCUU-C-GUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 32546 0.66 0.493096
Target:  5'- cGCCaCGCGccuGGCCgAGAAGCAGCgcgCCGGUg -3'
miRNA:   3'- -UGGcGCGC---UUGG-UCUUCGUCG---GGUUA- -5'
26512 5' -57.1 NC_005357.1 + 41978 0.66 0.493096
Target:  5'- cCCGCaaGCuGGCCGcGcAGCAGCCCAAc -3'
miRNA:   3'- uGGCG--CGcUUGGU-CuUCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 24379 0.66 0.482582
Target:  5'- cCCGCGcCGGuaagGCCcccAAGCAGCCCGc- -3'
miRNA:   3'- uGGCGC-GCU----UGGuc-UUCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 9229 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9157 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 16394 0.66 0.472177
Target:  5'- cGCCGCGCGGgcuuugauGCCAucgccGAGGaAGCCCu-- -3'
miRNA:   3'- -UGGCGCGCU--------UGGU-----CUUCgUCGGGuua -5'
26512 5' -57.1 NC_005357.1 + 679 0.66 0.472177
Target:  5'- gGCCGCcuacgGCGGcGCCGGccGGGCcGCCCAAg -3'
miRNA:   3'- -UGGCG-----CGCU-UGGUC--UUCGuCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 9205 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9133 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9109 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9085 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9013 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9061 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 9181 0.66 0.472177
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 12479 0.66 0.472177
Target:  5'- cGCCGCGaCGAcaagcaccACCuGAcuGGCaAGCCCAc- -3'
miRNA:   3'- -UGGCGC-GCU--------UGGuCU--UCG-UCGGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.