miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26512 5' -57.1 NC_005357.1 + 19558 1.05 0.000771
Target:  5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3'
miRNA:   3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 4044 0.78 0.078538
Target:  5'- gGCCGCgGCGAGCggCAGGccAGCGGCCCAGg -3'
miRNA:   3'- -UGGCG-CGCUUG--GUCU--UCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 10821 0.77 0.088069
Target:  5'- cGCUGCGUaaagcagcagguaGGGCCAGAAGCAGgCCCAGg -3'
miRNA:   3'- -UGGCGCG-------------CUUGGUCUUCGUC-GGGUUa -5'
26512 5' -57.1 NC_005357.1 + 17699 0.76 0.102198
Target:  5'- gGCCGCGCaGGCgCgguGGAAGCGGCCCGAc -3'
miRNA:   3'- -UGGCGCGcUUG-G---UCUUCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 4036 0.72 0.201593
Target:  5'- uGCCGCGCGggUC-GAGcGCAGCCgGGc -3'
miRNA:   3'- -UGGCGCGCuuGGuCUU-CGUCGGgUUa -5'
26512 5' -57.1 NC_005357.1 + 18093 0.72 0.201593
Target:  5'- aGCCgGCGCGAACCAGGAcgccuucgcGCcGUCCGGUa -3'
miRNA:   3'- -UGG-CGCGCUUGGUCUU---------CGuCGGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 27701 0.72 0.212888
Target:  5'- gGCCGCGC--GCCGGcAGCGGCUCGc- -3'
miRNA:   3'- -UGGCGCGcuUGGUCuUCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 21269 0.72 0.218737
Target:  5'- gGCCGCGCuguuGAACCAGGgcgcggacacGGCGGCCa--- -3'
miRNA:   3'- -UGGCGCG----CUUGGUCU----------UCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 28647 0.71 0.224722
Target:  5'- uCCGCGCGcaguGCCAGAucggugccGGCGGCCUc-- -3'
miRNA:   3'- uGGCGCGCu---UGGUCU--------UCGUCGGGuua -5'
26512 5' -57.1 NC_005357.1 + 24292 0.71 0.230846
Target:  5'- aGCUGCGCGAGCCGGgcGacaAGUUCGAc -3'
miRNA:   3'- -UGGCGCGCUUGGUCuuCg--UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 8997 0.71 0.236478
Target:  5'- cGCCGCGCGGGggcgcuuCCAGcAGGCGGCgcaCCAGUu -3'
miRNA:   3'- -UGGCGCGCUU-------GGUC-UUCGUCG---GGUUA- -5'
26512 5' -57.1 NC_005357.1 + 16030 0.7 0.2636
Target:  5'- cGCCGUGCuGGCCgAGAaguucgAGCAGUCCAAg -3'
miRNA:   3'- -UGGCGCGcUUGG-UCU------UCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 39603 0.7 0.270587
Target:  5'- cGCUGCGCGuGGCCGcGAGCaccuGGCCCGAc -3'
miRNA:   3'- -UGGCGCGC-UUGGUcUUCG----UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 36889 0.7 0.300028
Target:  5'- -gCGCGUGAuugACCAGAAGCuGCCg--- -3'
miRNA:   3'- ugGCGCGCU---UGGUCUUCGuCGGguua -5'
26512 5' -57.1 NC_005357.1 + 31039 0.69 0.307765
Target:  5'- aAUCGCGCGGGCCAacguGCgcgaaGGCCCGAa -3'
miRNA:   3'- -UGGCGCGCUUGGUcuu-CG-----UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 12965 0.69 0.312479
Target:  5'- gGCCGCGCGcucgucgccugguGCCAGGAGCA-CCUGGg -3'
miRNA:   3'- -UGGCGCGCu------------UGGUCUUCGUcGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 29027 0.69 0.315653
Target:  5'- cGCCGCGCuucGGCCAGGucgauacccaccGGCGGCUCGu- -3'
miRNA:   3'- -UGGCGCGc--UUGGUCU------------UCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 23752 0.69 0.340227
Target:  5'- cCCGCGUGGuguaacagGCCGGggGCGGgcgaccgccCCCGAUc -3'
miRNA:   3'- uGGCGCGCU--------UGGUCuuCGUC---------GGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 37202 0.68 0.357365
Target:  5'- aACUGCGCGAAcugcuggguauCCGGuuGCAGgCCAGc -3'
miRNA:   3'- -UGGCGCGCUU-----------GGUCuuCGUCgGGUUa -5'
26512 5' -57.1 NC_005357.1 + 33782 0.68 0.358237
Target:  5'- gACCGCGCGAugaagGCCGGcgaccucgccaccgcAGCGGCCgAGa -3'
miRNA:   3'- -UGGCGCGCU-----UGGUCu--------------UCGUCGGgUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.