Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26512 | 5' | -57.1 | NC_005357.1 | + | 40480 | 0.68 | 0.366158 |
Target: 5'- gGCCGCGCGcucGACCAGAAcccGCAGa-CGAUc -3' miRNA: 3'- -UGGCGCGC---UUGGUCUU---CGUCggGUUA- -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 25621 | 0.68 | 0.375099 |
Target: 5'- gGCgGCGCGGucGCCAGcAGCGcGUCCAc- -3' miRNA: 3'- -UGgCGCGCU--UGGUCuUCGU-CGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 21239 | 0.68 | 0.384186 |
Target: 5'- -aCGCGCaGACCAGcAGCAGgCCGc- -3' miRNA: 3'- ugGCGCGcUUGGUCuUCGUCgGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 24087 | 0.68 | 0.384186 |
Target: 5'- gACCGCGCGGGgCAcGGGCAcCCCGc- -3' miRNA: 3'- -UGGCGCGCUUgGUcUUCGUcGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 13666 | 0.68 | 0.384186 |
Target: 5'- cGCCGUGCGcGCCgAGAAGC-GCaCCGc- -3' miRNA: 3'- -UGGCGCGCuUGG-UCUUCGuCG-GGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 30635 | 0.68 | 0.384186 |
Target: 5'- aGCCgGCGCGAAUgAGGGcGCAGaCCAAUu -3' miRNA: 3'- -UGG-CGCGCUUGgUCUU-CGUCgGGUUA- -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 17785 | 0.68 | 0.384186 |
Target: 5'- -gCGCGCGAACggaUAGAAGCGcGCgCAGUa -3' miRNA: 3'- ugGCGCGCUUG---GUCUUCGU-CGgGUUA- -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 16149 | 0.68 | 0.392489 |
Target: 5'- cAUCGCGCGcgaugcgcgagccGACCAGGccggcGGguGCCCGu- -3' miRNA: 3'- -UGGCGCGC-------------UUGGUCU-----UCguCGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 11403 | 0.68 | 0.393418 |
Target: 5'- cCCGCGCGAuuGCCucGGccGGCaAGCCCGu- -3' miRNA: 3'- uGGCGCGCU--UGGu-CU--UCG-UCGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 19466 | 0.67 | 0.421962 |
Target: 5'- gGCUGaCGCaGGaauACCAGAAGCAGaCCGAa -3' miRNA: 3'- -UGGC-GCG-CU---UGGUCUUCGUCgGGUUa -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 602 | 0.67 | 0.421962 |
Target: 5'- gGCCGCcuGCGggUCGGccAGCAGCgCCGu- -3' miRNA: 3'- -UGGCG--CGCuuGGUCu-UCGUCG-GGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 33662 | 0.67 | 0.43175 |
Target: 5'- cGCCGCGUGcuGCCcGAAGCGGCaCGu- -3' miRNA: 3'- -UGGCGCGCu-UGGuCUUCGUCGgGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 18700 | 0.67 | 0.441669 |
Target: 5'- uGCUGCGCGccACC-GAGGCacuGGCCCGc- -3' miRNA: 3'- -UGGCGCGCu-UGGuCUUCG---UCGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 40408 | 0.67 | 0.451716 |
Target: 5'- cGCCuGCGCGAcuucGCCAGcGAGC-GCCUGGg -3' miRNA: 3'- -UGG-CGCGCU----UGGUC-UUCGuCGGGUUa -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 12845 | 0.67 | 0.451716 |
Target: 5'- aACCGCGCGc-CUGGgcGCGGCCg--- -3' miRNA: 3'- -UGGCGCGCuuGGUCuuCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 26771 | 0.66 | 0.461887 |
Target: 5'- cUCGgGCGAGCCGGuaagccauaucAGCGGCCUGGa -3' miRNA: 3'- uGGCgCGCUUGGUCu----------UCGUCGGGUUa -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 22557 | 0.66 | 0.461887 |
Target: 5'- -gCGCGCGAcGCCuucGGCAcGCCCGAa -3' miRNA: 3'- ugGCGCGCU-UGGucuUCGU-CGGGUUa -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 34321 | 0.66 | 0.469078 |
Target: 5'- gGCCGCGCGGugCAG-GGCcucaaacgcuuuugGGCCUc-- -3' miRNA: 3'- -UGGCGCGCUugGUCuUCG--------------UCGGGuua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9013 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 679 | 0.66 | 0.472177 |
Target: 5'- gGCCGCcuacgGCGGcGCCGGccGGGCcGCCCAAg -3' miRNA: 3'- -UGGCG-----CGCU-UGGUC--UUCGuCGGGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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