miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26512 5' -57.1 NC_005357.1 + 24647 0.66 0.514431
Target:  5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3'
miRNA:   3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 25621 0.68 0.375099
Target:  5'- gGCgGCGCGGucGCCAGcAGCGcGUCCAc- -3'
miRNA:   3'- -UGgCGCGCU--UGGUCuUCGU-CGGGUua -5'
26512 5' -57.1 NC_005357.1 + 26771 0.66 0.461887
Target:  5'- cUCGgGCGAGCCGGuaagccauaucAGCGGCCUGGa -3'
miRNA:   3'- uGGCgCGCUUGGUCu----------UCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 27701 0.72 0.212888
Target:  5'- gGCCGCGC--GCCGGcAGCGGCUCGc- -3'
miRNA:   3'- -UGGCGCGcuUGGUCuUCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 28647 0.71 0.224722
Target:  5'- uCCGCGCGcaguGCCAGAucggugccGGCGGCCUc-- -3'
miRNA:   3'- uGGCGCGCu---UGGUCU--------UCGUCGGGuua -5'
26512 5' -57.1 NC_005357.1 + 29027 0.69 0.315653
Target:  5'- cGCCGCGCuucGGCCAGGucgauacccaccGGCGGCUCGu- -3'
miRNA:   3'- -UGGCGCGc--UUGGUCU------------UCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 30635 0.68 0.384186
Target:  5'- aGCCgGCGCGAAUgAGGGcGCAGaCCAAUu -3'
miRNA:   3'- -UGG-CGCGCUUGgUCUU-CGUCgGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 31039 0.69 0.307765
Target:  5'- aAUCGCGCGGGCCAacguGCgcgaaGGCCCGAa -3'
miRNA:   3'- -UGGCGCGCUUGGUcuu-CG-----UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 31354 0.66 0.514431
Target:  5'- -gCGCGCGAcCCGGAcacguucgAGCAGUUCGu- -3'
miRNA:   3'- ugGCGCGCUuGGUCU--------UCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 32546 0.66 0.493096
Target:  5'- cGCCaCGCGccuGGCCgAGAAGCAGCgcgCCGGUg -3'
miRNA:   3'- -UGGcGCGC---UUGG-UCUUCGUCG---GGUUA- -5'
26512 5' -57.1 NC_005357.1 + 33662 0.67 0.43175
Target:  5'- cGCCGCGUGcuGCCcGAAGCGGCaCGu- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCGUCGgGUua -5'
26512 5' -57.1 NC_005357.1 + 33782 0.68 0.358237
Target:  5'- gACCGCGCGAugaagGCCGGcgaccucgccaccgcAGCGGCCgAGa -3'
miRNA:   3'- -UGGCGCGCU-----UGGUCu--------------UCGUCGGgUUa -5'
26512 5' -57.1 NC_005357.1 + 34321 0.66 0.469078
Target:  5'- gGCCGCGCGGugCAG-GGCcucaaacgcuuuugGGCCUc-- -3'
miRNA:   3'- -UGGCGCGCUugGUCuUCG--------------UCGGGuua -5'
26512 5' -57.1 NC_005357.1 + 36889 0.7 0.300028
Target:  5'- -gCGCGUGAuugACCAGAAGCuGCCg--- -3'
miRNA:   3'- ugGCGCGCU---UGGUCUUCGuCGGguua -5'
26512 5' -57.1 NC_005357.1 + 37202 0.68 0.357365
Target:  5'- aACUGCGCGAAcugcuggguauCCGGuuGCAGgCCAGc -3'
miRNA:   3'- -UGGCGCGCUU-----------GGUCuuCGUCgGGUUa -5'
26512 5' -57.1 NC_005357.1 + 39603 0.7 0.270587
Target:  5'- cGCUGCGCGuGGCCGcGAGCaccuGGCCCGAc -3'
miRNA:   3'- -UGGCGCGC-UUGGUcUUCG----UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 40408 0.67 0.451716
Target:  5'- cGCCuGCGCGAcuucGCCAGcGAGC-GCCUGGg -3'
miRNA:   3'- -UGG-CGCGCU----UGGUC-UUCGuCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 40480 0.68 0.366158
Target:  5'- gGCCGCGCGcucGACCAGAAcccGCAGa-CGAUc -3'
miRNA:   3'- -UGGCGCGC---UUGGUCUU---CGUCggGUUA- -5'
26512 5' -57.1 NC_005357.1 + 41978 0.66 0.493096
Target:  5'- cCCGCaaGCuGGCCGcGcAGCAGCCCAAc -3'
miRNA:   3'- uGGCG--CGcUUGGU-CuUCGUCGGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.