miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26512 5' -57.1 NC_005357.1 + 24292 0.71 0.230846
Target:  5'- aGCUGCGCGAGCCGGgcGacaAGUUCGAc -3'
miRNA:   3'- -UGGCGCGCUUGGUCuuCg--UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 24087 0.68 0.384186
Target:  5'- gACCGCGCGGGgCAcGGGCAcCCCGc- -3'
miRNA:   3'- -UGGCGCGCUUgGUcUUCGUcGGGUua -5'
26512 5' -57.1 NC_005357.1 + 23752 0.69 0.340227
Target:  5'- cCCGCGUGGuguaacagGCCGGggGCGGgcgaccgccCCCGAUc -3'
miRNA:   3'- uGGCGCGCU--------UGGUCuuCGUC---------GGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 22557 0.66 0.461887
Target:  5'- -gCGCGCGAcGCCuucGGCAcGCCCGAa -3'
miRNA:   3'- ugGCGCGCU-UGGucuUCGU-CGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 21269 0.72 0.218737
Target:  5'- gGCCGCGCuguuGAACCAGGgcgcggacacGGCGGCCa--- -3'
miRNA:   3'- -UGGCGCG----CUUGGUCU----------UCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 21239 0.68 0.384186
Target:  5'- -aCGCGCaGACCAGcAGCAGgCCGc- -3'
miRNA:   3'- ugGCGCGcUUGGUCuUCGUCgGGUua -5'
26512 5' -57.1 NC_005357.1 + 19558 1.05 0.000771
Target:  5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3'
miRNA:   3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 19466 0.67 0.421962
Target:  5'- gGCUGaCGCaGGaauACCAGAAGCAGaCCGAa -3'
miRNA:   3'- -UGGC-GCG-CU---UGGUCUUCGUCgGGUUa -5'
26512 5' -57.1 NC_005357.1 + 18986 0.66 0.514431
Target:  5'- -aCGCGCGAACCAuccGCAuCCCGGc -3'
miRNA:   3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 18700 0.67 0.441669
Target:  5'- uGCUGCGCGccACC-GAGGCacuGGCCCGc- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCG---UCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 18093 0.72 0.201593
Target:  5'- aGCCgGCGCGAACCAGGAcgccuucgcGCcGUCCGGUa -3'
miRNA:   3'- -UGG-CGCGCUUGGUCUU---------CGuCGGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 17785 0.68 0.384186
Target:  5'- -gCGCGCGAACggaUAGAAGCGcGCgCAGUa -3'
miRNA:   3'- ugGCGCGCUUG---GUCUUCGU-CGgGUUA- -5'
26512 5' -57.1 NC_005357.1 + 17699 0.76 0.102198
Target:  5'- gGCCGCGCaGGCgCgguGGAAGCGGCCCGAc -3'
miRNA:   3'- -UGGCGCGcUUG-G---UCUUCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 16394 0.66 0.472177
Target:  5'- cGCCGCGCGGgcuuugauGCCAucgccGAGGaAGCCCu-- -3'
miRNA:   3'- -UGGCGCGCU--------UGGU-----CUUCgUCGGGuua -5'
26512 5' -57.1 NC_005357.1 + 16149 0.68 0.392489
Target:  5'- cAUCGCGCGcgaugcgcgagccGACCAGGccggcGGguGCCCGu- -3'
miRNA:   3'- -UGGCGCGC-------------UUGGUCU-----UCguCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 16030 0.7 0.2636
Target:  5'- cGCCGUGCuGGCCgAGAaguucgAGCAGUCCAAg -3'
miRNA:   3'- -UGGCGCGcUUGG-UCU------UCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 13666 0.68 0.384186
Target:  5'- cGCCGUGCGcGCCgAGAAGC-GCaCCGc- -3'
miRNA:   3'- -UGGCGCGCuUGG-UCUUCGuCG-GGUua -5'
26512 5' -57.1 NC_005357.1 + 12965 0.69 0.312479
Target:  5'- gGCCGCGCGcucgucgccugguGCCAGGAGCA-CCUGGg -3'
miRNA:   3'- -UGGCGCGCu------------UGGUCUUCGUcGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 12845 0.67 0.451716
Target:  5'- aACCGCGCGc-CUGGgcGCGGCCg--- -3'
miRNA:   3'- -UGGCGCGCuuGGUCuuCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 12479 0.66 0.472177
Target:  5'- cGCCGCGaCGAcaagcaccACCuGAcuGGCaAGCCCAc- -3'
miRNA:   3'- -UGGCGC-GCU--------UGGuCU--UCG-UCGGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.