miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26512 5' -57.1 NC_005357.1 + 40408 0.67 0.451716
Target:  5'- cGCCuGCGCGAcuucGCCAGcGAGC-GCCUGGg -3'
miRNA:   3'- -UGG-CGCGCU----UGGUC-UUCGuCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 4044 0.78 0.078538
Target:  5'- gGCCGCgGCGAGCggCAGGccAGCGGCCCAGg -3'
miRNA:   3'- -UGGCG-CGCUUG--GUCU--UCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 10821 0.77 0.088069
Target:  5'- cGCUGCGUaaagcagcagguaGGGCCAGAAGCAGgCCCAGg -3'
miRNA:   3'- -UGGCGCG-------------CUUGGUCUUCGUC-GGGUUa -5'
26512 5' -57.1 NC_005357.1 + 17699 0.76 0.102198
Target:  5'- gGCCGCGCaGGCgCgguGGAAGCGGCCCGAc -3'
miRNA:   3'- -UGGCGCGcUUG-G---UCUUCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 21269 0.72 0.218737
Target:  5'- gGCCGCGCuguuGAACCAGGgcgcggacacGGCGGCCa--- -3'
miRNA:   3'- -UGGCGCG----CUUGGUCU----------UCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 24292 0.71 0.230846
Target:  5'- aGCUGCGCGAGCCGGgcGacaAGUUCGAc -3'
miRNA:   3'- -UGGCGCGCUUGGUCuuCg--UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 16030 0.7 0.2636
Target:  5'- cGCCGUGCuGGCCgAGAaguucgAGCAGUCCAAg -3'
miRNA:   3'- -UGGCGCGcUUGG-UCU------UCGUCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 12965 0.69 0.312479
Target:  5'- gGCCGCGCGcucgucgccugguGCCAGGAGCA-CCUGGg -3'
miRNA:   3'- -UGGCGCGCu------------UGGUCUUCGUcGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 23752 0.69 0.340227
Target:  5'- cCCGCGUGGuguaacagGCCGGggGCGGgcgaccgccCCCGAUc -3'
miRNA:   3'- uGGCGCGCU--------UGGUCuuCGUC---------GGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 33782 0.68 0.358237
Target:  5'- gACCGCGCGAugaagGCCGGcgaccucgccaccgcAGCGGCCgAGa -3'
miRNA:   3'- -UGGCGCGCU-----UGGUCu--------------UCGUCGGgUUa -5'
26512 5' -57.1 NC_005357.1 + 13666 0.68 0.384186
Target:  5'- cGCCGUGCGcGCCgAGAAGC-GCaCCGc- -3'
miRNA:   3'- -UGGCGCGCuUGG-UCUUCGuCG-GGUua -5'
26512 5' -57.1 NC_005357.1 + 21239 0.68 0.384186
Target:  5'- -aCGCGCaGACCAGcAGCAGgCCGc- -3'
miRNA:   3'- ugGCGCGcUUGGUCuUCGUCgGGUua -5'
26512 5' -57.1 NC_005357.1 + 16149 0.68 0.392489
Target:  5'- cAUCGCGCGcgaugcgcgagccGACCAGGccggcGGguGCCCGu- -3'
miRNA:   3'- -UGGCGCGC-------------UUGGUCU-----UCguCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 11403 0.68 0.393418
Target:  5'- cCCGCGCGAuuGCCucGGccGGCaAGCCCGu- -3'
miRNA:   3'- uGGCGCGCU--UGGu-CU--UCG-UCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 19466 0.67 0.421962
Target:  5'- gGCUGaCGCaGGaauACCAGAAGCAGaCCGAa -3'
miRNA:   3'- -UGGC-GCG-CU---UGGUCUUCGUCgGGUUa -5'
26512 5' -57.1 NC_005357.1 + 33662 0.67 0.43175
Target:  5'- cGCCGCGUGcuGCCcGAAGCGGCaCGu- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCGUCGgGUua -5'
26512 5' -57.1 NC_005357.1 + 18700 0.67 0.441669
Target:  5'- uGCUGCGCGccACC-GAGGCacuGGCCCGc- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCG---UCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 12845 0.67 0.451716
Target:  5'- aACCGCGCGc-CUGGgcGCGGCCg--- -3'
miRNA:   3'- -UGGCGCGCuuGGUCuuCGUCGGguua -5'
26512 5' -57.1 NC_005357.1 + 19558 1.05 0.000771
Target:  5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3'
miRNA:   3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.