Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26512 | 5' | -57.1 | NC_005357.1 | + | 19558 | 1.05 | 0.000771 |
Target: 5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3' miRNA: 3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 12479 | 0.66 | 0.472177 |
Target: 5'- cGCCGCGaCGAcaagcaccACCuGAcuGGCaAGCCCAc- -3' miRNA: 3'- -UGGCGC-GCU--------UGGuCU--UCG-UCGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9133 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9061 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 18986 | 0.66 | 0.514431 |
Target: 5'- -aCGCGCGAACCAuccGCAuCCCGGc -3' miRNA: 3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 32546 | 0.66 | 0.493096 |
Target: 5'- cGCCaCGCGccuGGCCgAGAAGCAGCgcgCCGGUg -3' miRNA: 3'- -UGGcGCGC---UUGG-UCUUCGUCG---GGUUA- -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9205 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9037 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 24379 | 0.66 | 0.482582 |
Target: 5'- cCCGCGcCGGuaagGCCcccAAGCAGCCCGc- -3' miRNA: 3'- uGGCGC-GCU----UGGuc-UUCGUCGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9013 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9229 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 16394 | 0.66 | 0.472177 |
Target: 5'- cGCCGCGCGGgcuuugauGCCAucgccGAGGaAGCCCu-- -3' miRNA: 3'- -UGGCGCGCU--------UGGU-----CUUCgUCGGGuua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9181 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9157 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9109 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 9085 | 0.66 | 0.472177 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 31354 | 0.66 | 0.514431 |
Target: 5'- -gCGCGCGAcCCGGAcacguucgAGCAGUUCGu- -3' miRNA: 3'- ugGCGCGCUuGGUCU--------UCGUCGGGUua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 41978 | 0.66 | 0.493096 |
Target: 5'- cCCGCaaGCuGGCCGcGcAGCAGCCCAAc -3' miRNA: 3'- uGGCG--CGcUUGGU-CuUCGUCGGGUUa -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 34321 | 0.66 | 0.469078 |
Target: 5'- gGCCGCGCGGugCAG-GGCcucaaacgcuuuugGGCCUc-- -3' miRNA: 3'- -UGGCGCGCUugGUCuUCG--------------UCGGGuua -5' |
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26512 | 5' | -57.1 | NC_005357.1 | + | 30635 | 0.68 | 0.384186 |
Target: 5'- aGCCgGCGCGAAUgAGGGcGCAGaCCAAUu -3' miRNA: 3'- -UGG-CGCGCUUGgUCUU-CGUCgGGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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