miRNA display CGI


Results 41 - 59 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26512 5' -57.1 NC_005357.1 + 31039 0.69 0.307765
Target:  5'- aAUCGCGCGGGCCAacguGCgcgaaGGCCCGAa -3'
miRNA:   3'- -UGGCGCGCUUGGUcuu-CG-----UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 36889 0.7 0.300028
Target:  5'- -gCGCGUGAuugACCAGAAGCuGCCg--- -3'
miRNA:   3'- ugGCGCGCU---UGGUCUUCGuCGGguua -5'
26512 5' -57.1 NC_005357.1 + 39603 0.7 0.270587
Target:  5'- cGCUGCGCGuGGCCGcGAGCaccuGGCCCGAc -3'
miRNA:   3'- -UGGCGCGC-UUGGUcUUCG----UCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 8997 0.71 0.236478
Target:  5'- cGCCGCGCGGGggcgcuuCCAGcAGGCGGCgcaCCAGUu -3'
miRNA:   3'- -UGGCGCGCUU-------GGUC-UUCGUCG---GGUUA- -5'
26512 5' -57.1 NC_005357.1 + 28647 0.71 0.224722
Target:  5'- uCCGCGCGcaguGCCAGAucggugccGGCGGCCUc-- -3'
miRNA:   3'- uGGCGCGCu---UGGUCU--------UCGUCGGGuua -5'
26512 5' -57.1 NC_005357.1 + 27701 0.72 0.212888
Target:  5'- gGCCGCGC--GCCGGcAGCGGCUCGc- -3'
miRNA:   3'- -UGGCGCGcuUGGUCuUCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 18093 0.72 0.201593
Target:  5'- aGCCgGCGCGAACCAGGAcgccuucgcGCcGUCCGGUa -3'
miRNA:   3'- -UGG-CGCGCUUGGUCUU---------CGuCGGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 37202 0.68 0.357365
Target:  5'- aACUGCGCGAAcugcuggguauCCGGuuGCAGgCCAGc -3'
miRNA:   3'- -UGGCGCGCUU-----------GGUCuuCGUCgGGUUa -5'
26512 5' -57.1 NC_005357.1 + 40480 0.68 0.366158
Target:  5'- gGCCGCGCGcucGACCAGAAcccGCAGa-CGAUc -3'
miRNA:   3'- -UGGCGCGC---UUGGUCUU---CGUCggGUUA- -5'
26512 5' -57.1 NC_005357.1 + 24647 0.66 0.514431
Target:  5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3'
miRNA:   3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 6400 0.66 0.503715
Target:  5'- gGCCgGCcCGGugUAGucGCGGCCCAu- -3'
miRNA:   3'- -UGG-CGcGCUugGUCuuCGUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 3461 0.66 0.500519
Target:  5'- cGCCGCgcgccccgaagaacGCGAACgAGAAcGaCGGCCCGc- -3'
miRNA:   3'- -UGGCG--------------CGCUUGgUCUU-C-GUCGGGUua -5'
26512 5' -57.1 NC_005357.1 + 679 0.66 0.472177
Target:  5'- gGCCGCcuacgGCGGcGCCGGccGGGCcGCCCAAg -3'
miRNA:   3'- -UGGCG-----CGCU-UGGUC--UUCGuCGGGUUa -5'
26512 5' -57.1 NC_005357.1 + 602 0.67 0.421962
Target:  5'- gGCCGCcuGCGggUCGGccAGCAGCgCCGu- -3'
miRNA:   3'- -UGGCG--CGCuuGGUCu-UCGUCG-GGUua -5'
26512 5' -57.1 NC_005357.1 + 30635 0.68 0.384186
Target:  5'- aGCCgGCGCGAAUgAGGGcGCAGaCCAAUu -3'
miRNA:   3'- -UGG-CGCGCUUGgUCUU-CGUCgGGUUA- -5'
26512 5' -57.1 NC_005357.1 + 24087 0.68 0.384186
Target:  5'- gACCGCGCGGGgCAcGGGCAcCCCGc- -3'
miRNA:   3'- -UGGCGCGCUUgGUcUUCGUcGGGUua -5'
26512 5' -57.1 NC_005357.1 + 17785 0.68 0.384186
Target:  5'- -gCGCGCGAACggaUAGAAGCGcGCgCAGUa -3'
miRNA:   3'- ugGCGCGCUUG---GUCUUCGU-CGgGUUA- -5'
26512 5' -57.1 NC_005357.1 + 25621 0.68 0.375099
Target:  5'- gGCgGCGCGGucGCCAGcAGCGcGUCCAc- -3'
miRNA:   3'- -UGgCGCGCU--UGGUCuUCGU-CGGGUua -5'
26512 5' -57.1 NC_005357.1 + 4036 0.72 0.201593
Target:  5'- uGCCGCGCGggUC-GAGcGCAGCCgGGc -3'
miRNA:   3'- -UGGCGCGCuuGGuCUU-CGUCGGgUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.