miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26513 3' -48.2 NC_005357.1 + 17352 0.66 0.951045
Target:  5'- --gGCGCGCugcgcUGggU-GGCGAugcUGCCc -3'
miRNA:   3'- uuaUGCGCGu----ACuuAgCCGUUu--ACGG- -5'
26513 3' -48.2 NC_005357.1 + 177 0.66 0.951045
Target:  5'- --cGCGCGCA-GAAUgcCGGCGucauccccGCCa -3'
miRNA:   3'- uuaUGCGCGUaCUUA--GCCGUuua-----CGG- -5'
26513 3' -48.2 NC_005357.1 + 31447 0.66 0.951045
Target:  5'- -cUGCG-GCGUGGucAUCGGaaaguGGGUGCCu -3'
miRNA:   3'- uuAUGCgCGUACU--UAGCCg----UUUACGG- -5'
26513 3' -48.2 NC_005357.1 + 28775 0.66 0.951045
Target:  5'- --gGCGCGCAcgGcGUCGcGCu--UGCCc -3'
miRNA:   3'- uuaUGCGCGUa-CuUAGC-CGuuuACGG- -5'
26513 3' -48.2 NC_005357.1 + 24708 0.66 0.951045
Target:  5'- aAAUGCGCGCAgcuUGccgcGAUgGGCAuuucccgGCCc -3'
miRNA:   3'- -UUAUGCGCGU---AC----UUAgCCGUuua----CGG- -5'
26513 3' -48.2 NC_005357.1 + 13471 0.66 0.946087
Target:  5'- cGGUGuCGgGCAUGAccUgGGCG-AUGCCg -3'
miRNA:   3'- -UUAU-GCgCGUACUu-AgCCGUuUACGG- -5'
26513 3' -48.2 NC_005357.1 + 13325 0.66 0.946087
Target:  5'- --gGCgGCGUAggcuuUCGGCAGGUcGCCg -3'
miRNA:   3'- uuaUG-CGCGUacuu-AGCCGUUUA-CGG- -5'
26513 3' -48.2 NC_005357.1 + 22535 0.66 0.940811
Target:  5'- --cACGCGCAg----CGcGCGcGUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGC-CGUuUACGG- -5'
26513 3' -48.2 NC_005357.1 + 24115 0.66 0.940811
Target:  5'- cAUGCGCGCGUagGggUCGuaGuccaGCCg -3'
miRNA:   3'- uUAUGCGCGUA--CuuAGCcgUuua-CGG- -5'
26513 3' -48.2 NC_005357.1 + 31894 0.66 0.940811
Target:  5'- ---uUGCGCGUGg--CGGCGGAaagcgugGCCg -3'
miRNA:   3'- uuauGCGCGUACuuaGCCGUUUa------CGG- -5'
26513 3' -48.2 NC_005357.1 + 41052 0.66 0.940811
Target:  5'- ---gUGCGCGUGGccgCGGCGcccuAUGUCa -3'
miRNA:   3'- uuauGCGCGUACUua-GCCGUu---UACGG- -5'
26513 3' -48.2 NC_005357.1 + 638 0.66 0.935211
Target:  5'- --gGCGCGgGUGAacggGUCaGGCGGggGCUu -3'
miRNA:   3'- uuaUGCGCgUACU----UAG-CCGUUuaCGG- -5'
26513 3' -48.2 NC_005357.1 + 37655 0.67 0.929286
Target:  5'- -cUGgGCGCAgu-GUgGGCGAAcGCCg -3'
miRNA:   3'- uuAUgCGCGUacuUAgCCGUUUaCGG- -5'
26513 3' -48.2 NC_005357.1 + 35977 0.67 0.929286
Target:  5'- ----gGUGCGUGAGUuCGGgGAAgcaGCCa -3'
miRNA:   3'- uuaugCGCGUACUUA-GCCgUUUa--CGG- -5'
26513 3' -48.2 NC_005357.1 + 18991 0.67 0.929286
Target:  5'- cAGU-CGCGCA-GggUCaGGCcGAUGUCc -3'
miRNA:   3'- -UUAuGCGCGUaCuuAG-CCGuUUACGG- -5'
26513 3' -48.2 NC_005357.1 + 25371 0.67 0.929286
Target:  5'- cGUGCGCGagGUGAAggauUCGGCcaagaAGGUGCg -3'
miRNA:   3'- uUAUGCGCg-UACUU----AGCCG-----UUUACGg -5'
26513 3' -48.2 NC_005357.1 + 33784 0.67 0.929286
Target:  5'- ---cCGCGCgAUGAAggcCGGCGAccucGCCa -3'
miRNA:   3'- uuauGCGCG-UACUUa--GCCGUUua--CGG- -5'
26513 3' -48.2 NC_005357.1 + 25639 0.67 0.923035
Target:  5'- --aGCGCGUccaccUCGGCGAGuucUGCCg -3'
miRNA:   3'- uuaUGCGCGuacuuAGCCGUUU---ACGG- -5'
26513 3' -48.2 NC_005357.1 + 17305 0.67 0.923035
Target:  5'- --gGCGCGCAUccauucCGGCAuauggGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuua--GCCGUuua--CGG- -5'
26513 3' -48.2 NC_005357.1 + 16651 0.67 0.923035
Target:  5'- --cGCGCGCAUcg--CGGCcaucguUGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuuaGCCGuuu---ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.