Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26513 | 5' | -60.8 | NC_005357.1 | + | 341 | 0.68 | 0.275666 |
Target: 5'- gGuGGCGUcGCGCagcaGGCCGUC-CGCCa -3' miRNA: 3'- gC-CCGCA-CGCGga--CUGGUAGuGCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 368 | 0.68 | 0.268185 |
Target: 5'- cCGGGUGUGCuugGCCUGccgauugagcgcgGCCAgCGCGCg- -3' miRNA: 3'- -GCCCGCACG---CGGAC-------------UGGUaGUGCGga -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 1751 | 0.79 | 0.041303 |
Target: 5'- cCGGGCGgucauggccggccUGCGCCUGGCgCGUCGgGCCg -3' miRNA: 3'- -GCCCGC-------------ACGCGGACUG-GUAGUgCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 4249 | 0.67 | 0.289695 |
Target: 5'- -uGGCGUagucgGUGCC-GGCCGUCAgCGCCg -3' miRNA: 3'- gcCCGCA-----CGCGGaCUGGUAGU-GCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 4375 | 0.67 | 0.319417 |
Target: 5'- -aGGCGgaUGCGCagccagGcGCCGUCGCGCCg -3' miRNA: 3'- gcCCGC--ACGCGga----C-UGGUAGUGCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 4640 | 0.71 | 0.168349 |
Target: 5'- uGGGCcacgcUGCGUC-GGCCAUCGCGUCa -3' miRNA: 3'- gCCCGc----ACGCGGaCUGGUAGUGCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 5441 | 0.71 | 0.172916 |
Target: 5'- gGcGGCGUGgGCgaGgucgguaucgACCAUCACGCCg -3' miRNA: 3'- gC-CCGCACgCGgaC----------UGGUAGUGCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 5757 | 0.73 | 0.111471 |
Target: 5'- cCGGGCagcgaGUGCGCCagggccuUGACCAUCGuguccCGCCa -3' miRNA: 3'- -GCCCG-----CACGCGG-------ACUGGUAGU-----GCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 9561 | 0.68 | 0.255649 |
Target: 5'- uCGGGCGcgacaaucucgGCGCC-GACCGUCuGCgGCCa -3' miRNA: 3'- -GCCCGCa----------CGCGGaCUGGUAG-UG-CGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 14679 | 0.66 | 0.35137 |
Target: 5'- gCGGGUGUugaGCGCUUGaaGCCcggccugcaGUUGCGCCUc -3' miRNA: 3'- -GCCCGCA---CGCGGAC--UGG---------UAGUGCGGA- -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 15606 | 0.7 | 0.192307 |
Target: 5'- gGGGCGgcGCaGCCUG-CCAaaaacagCACGCCUa -3' miRNA: 3'- gCCCGCa-CG-CGGACuGGUa------GUGCGGA- -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 18098 | 0.66 | 0.35137 |
Target: 5'- aCGGGCaucgcucUGcCGCCUGACCcgCGgcugcuCGCCg -3' miRNA: 3'- -GCCCGc------AC-GCGGACUGGuaGU------GCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 18493 | 1.08 | 0.000252 |
Target: 5'- cCGGGCGUGCGCCUGACCAUCACGCCUa -3' miRNA: 3'- -GCCCGCACGCGGACUGGUAGUGCGGA- -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 19011 | 0.67 | 0.296917 |
Target: 5'- -cGGCGU-CGCaCUGACCggCGCGCUc -3' miRNA: 3'- gcCCGCAcGCG-GACUGGuaGUGCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 20757 | 0.69 | 0.242977 |
Target: 5'- aGaGGCGcUGCGCCgcgcucGACuCAUCGCGCg- -3' miRNA: 3'- gC-CCGC-ACGCGGa-----CUG-GUAGUGCGga -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 21325 | 0.67 | 0.296917 |
Target: 5'- uCGGGCuUGaUGCC-GGCCAcCGCGCCc -3' miRNA: 3'- -GCCCGcAC-GCGGaCUGGUaGUGCGGa -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 23581 | 0.72 | 0.151143 |
Target: 5'- gCGGGCGggggGCGacgaUGGCCGUCAUGCg- -3' miRNA: 3'- -GCCCGCa---CGCgg--ACUGGUAGUGCGga -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 24127 | 0.71 | 0.174774 |
Target: 5'- gGGGuCGUaguccagccggcugcGCGCCUGGCCca-GCGCCUc -3' miRNA: 3'- gCCC-GCA---------------CGCGGACUGGuagUGCGGA- -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 25827 | 0.66 | 0.359705 |
Target: 5'- -cGGCG-GCGCCaacACCAUCGCGUg- -3' miRNA: 3'- gcCCGCaCGCGGac-UGGUAGUGCGga -5' |
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26513 | 5' | -60.8 | NC_005357.1 | + | 26162 | 0.68 | 0.255649 |
Target: 5'- cCGGGUGgccgcGCGCgaGGCCA--ACGCCa -3' miRNA: 3'- -GCCCGCa----CGCGgaCUGGUagUGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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