miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 3' -56.1 NC_005357.1 + 19627 0.66 0.647833
Target:  5'- gUCAUGCGGgccgcgaCAUCgGCCagcgucggguUGGugGUGGa -3'
miRNA:   3'- -GGUGCGCCa------GUAGgUGG----------ACCugCACU- -5'
26514 3' -56.1 NC_005357.1 + 3752 0.66 0.647833
Target:  5'- gCACGuCGGUg--CCGCCgcUGGACGUa- -3'
miRNA:   3'- gGUGC-GCCAguaGGUGG--ACCUGCAcu -5'
26514 3' -56.1 NC_005357.1 + 21724 0.66 0.636827
Target:  5'- -aACGCGGUaCGgaugCCACCguUGGGCGcGGc -3'
miRNA:   3'- ggUGCGCCA-GUa---GGUGG--ACCUGCaCU- -5'
26514 3' -56.1 NC_005357.1 + 25739 0.66 0.614811
Target:  5'- gCUACGUGGUCA-CgGcCCUGGAUGccGAg -3'
miRNA:   3'- -GGUGCGCCAGUaGgU-GGACCUGCa-CU- -5'
26514 3' -56.1 NC_005357.1 + 18355 0.67 0.581922
Target:  5'- cCCGCGCGGUCG-CCGCUacUGuGCGcGGc -3'
miRNA:   3'- -GGUGCGCCAGUaGGUGG--ACcUGCaCU- -5'
26514 3' -56.1 NC_005357.1 + 40192 0.67 0.581922
Target:  5'- -uGCGCGGcCAcgcgCCGCCUGcugcGCGUGGu -3'
miRNA:   3'- ggUGCGCCaGUa---GGUGGACc---UGCACU- -5'
26514 3' -56.1 NC_005357.1 + 28122 0.67 0.581922
Target:  5'- gUCACGCGGUa---CGCCUGGuCGg-- -3'
miRNA:   3'- -GGUGCGCCAguagGUGGACCuGCacu -5'
26514 3' -56.1 NC_005357.1 + 23458 0.67 0.56019
Target:  5'- aCugGCGuuacGUCGUCCGCaucgccaaugUGGACGUGu -3'
miRNA:   3'- gGugCGC----CAGUAGGUGg---------ACCUGCACu -5'
26514 3' -56.1 NC_005357.1 + 2394 0.67 0.549407
Target:  5'- gCAUgGCGGUCGcugCCuACCUGGAUG-GAc -3'
miRNA:   3'- gGUG-CGCCAGUa--GG-UGGACCUGCaCU- -5'
26514 3' -56.1 NC_005357.1 + 27595 0.67 0.549407
Target:  5'- gCCGCcaaCGG-CAUCgACCUGGGCGa-- -3'
miRNA:   3'- -GGUGc--GCCaGUAGgUGGACCUGCacu -5'
26514 3' -56.1 NC_005357.1 + 1750 0.68 0.517477
Target:  5'- aCCGgGCGGUCAuggccggccUgCGCCUGGcGCGUcGGg -3'
miRNA:   3'- -GGUgCGCCAGU---------AgGUGGACC-UGCA-CU- -5'
26514 3' -56.1 NC_005357.1 + 33740 0.68 0.506996
Target:  5'- uCUGCGCGG-CG-CaCACCUGGGCGg-- -3'
miRNA:   3'- -GGUGCGCCaGUaG-GUGGACCUGCacu -5'
26514 3' -56.1 NC_005357.1 + 25622 0.68 0.496607
Target:  5'- gCgGCGCGGUCgccagcagcgcGUCCACCUcGGCGa-- -3'
miRNA:   3'- -GgUGCGCCAG-----------UAGGUGGAcCUGCacu -5'
26514 3' -56.1 NC_005357.1 + 41120 0.68 0.496607
Target:  5'- gCCugGUGGcCGUCgC-CCUGGGCGcGGc -3'
miRNA:   3'- -GGugCGCCaGUAG-GuGGACCUGCaCU- -5'
26514 3' -56.1 NC_005357.1 + 23872 0.68 0.496607
Target:  5'- -aGCGCGGcC-UCCACC--GACGUGAu -3'
miRNA:   3'- ggUGCGCCaGuAGGUGGacCUGCACU- -5'
26514 3' -56.1 NC_005357.1 + 25611 0.68 0.476124
Target:  5'- gCCGCGUGaacugCG-CCGCCUGGGCGcGAc -3'
miRNA:   3'- -GGUGCGCca---GUaGGUGGACCUGCaCU- -5'
26514 3' -56.1 NC_005357.1 + 16198 0.69 0.45607
Target:  5'- gCCACGCGc-CAUUCGCCcgaaGACGUGAg -3'
miRNA:   3'- -GGUGCGCcaGUAGGUGGac--CUGCACU- -5'
26514 3' -56.1 NC_005357.1 + 14211 0.69 0.45607
Target:  5'- gCGCGUGGUCGUcggcguggCCgACCUGGACa--- -3'
miRNA:   3'- gGUGCGCCAGUA--------GG-UGGACCUGcacu -5'
26514 3' -56.1 NC_005357.1 + 28767 0.69 0.455079
Target:  5'- -uGCGCGGUCAUaUCACCaaggacaUGGACGg-- -3'
miRNA:   3'- ggUGCGCCAGUA-GGUGG-------ACCUGCacu -5'
26514 3' -56.1 NC_005357.1 + 40982 0.7 0.415501
Target:  5'- aCCGCGCcGUCAagaagguguuugCCAUCuUGGGCGUGGa -3'
miRNA:   3'- -GGUGCGcCAGUa-----------GGUGG-ACCUGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.