miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26514 5' -59.3 NC_005357.1 + 25631 0.66 0.45008
Target:  5'- uCGCCAGCagcgcguccaCCUcgGCGAgUUCUgccGGCGUc -3'
miRNA:   3'- -GCGGUCGg---------GGA--UGCUgAAGGa--CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 25713 0.66 0.45008
Target:  5'- -aCCAGCCCC-GCGGCggggucgucgUCCUcaccGGCGg -3'
miRNA:   3'- gcGGUCGGGGaUGCUGa---------AGGA----CCGCg -5'
26514 5' -59.3 NC_005357.1 + 27686 0.66 0.45008
Target:  5'- gCGCCAauGCUgcgcguacugCCUGgGGCUaCCgGGCGCa -3'
miRNA:   3'- -GCGGU--CGG----------GGAUgCUGAaGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27589 0.66 0.45008
Target:  5'- gCGCUGGCCgCCaACGGCaucgaCCUGG-GCg -3'
miRNA:   3'- -GCGGUCGG-GGaUGCUGaa---GGACCgCG- -5'
26514 5' -59.3 NC_005357.1 + 34739 0.66 0.448131
Target:  5'- aGCCGGCCgCCgaggucaagccCGACgaCCUGGCc- -3'
miRNA:   3'- gCGGUCGG-GGau---------GCUGaaGGACCGcg -5'
26514 5' -59.3 NC_005357.1 + 18521 0.66 0.440384
Target:  5'- uGCCGGCauggaagCCgcgggcgugGCGcACUUCCUuGGCGUa -3'
miRNA:   3'- gCGGUCGg------GGa--------UGC-UGAAGGA-CCGCG- -5'
26514 5' -59.3 NC_005357.1 + 32707 0.66 0.440384
Target:  5'- aGUUcGCCC--GCGGCUUCgaGGCGUa -3'
miRNA:   3'- gCGGuCGGGgaUGCUGAAGgaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 14483 0.66 0.440384
Target:  5'- uCGCCAuCCCCUACGGg-UCg-GGCaGCa -3'
miRNA:   3'- -GCGGUcGGGGAUGCUgaAGgaCCG-CG- -5'
26514 5' -59.3 NC_005357.1 + 9169 0.66 0.440384
Target:  5'- gGCCGGCa---GCGACaaCUUGGCGCc -3'
miRNA:   3'- gCGGUCGgggaUGCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 6400 0.66 0.440384
Target:  5'- gGCCGGCCCgguguagucGCGGCccaugUCgUUGGCGCc -3'
miRNA:   3'- gCGGUCGGGga-------UGCUGa----AG-GACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 18305 0.66 0.440384
Target:  5'- aGCCGGCUggaCUACGACc-CCUacGCGCg -3'
miRNA:   3'- gCGGUCGGg--GAUGCUGaaGGAc-CGCG- -5'
26514 5' -59.3 NC_005357.1 + 32360 0.66 0.430809
Target:  5'- gGCUcGCCCCgACGACg-CCUcGGaCGCu -3'
miRNA:   3'- gCGGuCGGGGaUGCUGaaGGA-CC-GCG- -5'
26514 5' -59.3 NC_005357.1 + 14617 0.66 0.421356
Target:  5'- gCGUCGGCUUCcAUG-CUUCC-GGCGCc -3'
miRNA:   3'- -GCGGUCGGGGaUGCuGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27502 0.66 0.421356
Target:  5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3'
miRNA:   3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5'
26514 5' -59.3 NC_005357.1 + 12747 0.66 0.421356
Target:  5'- uGCCGcGCCCa---GACg-CUUGGCGCg -3'
miRNA:   3'- gCGGU-CGGGgaugCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 42273 0.66 0.421356
Target:  5'- gGCgCAuCCgCCUGCGGggaagCCUGGCGCc -3'
miRNA:   3'- gCG-GUcGG-GGAUGCUgaa--GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 22948 0.66 0.41203
Target:  5'- gGCCuGCCac--CGGCa-CCUGGCGCa -3'
miRNA:   3'- gCGGuCGGggauGCUGaaGGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 5101 0.66 0.41203
Target:  5'- gGCCGGCCCa-GCGuccgguGCgg-CUGGCGCc -3'
miRNA:   3'- gCGGUCGGGgaUGC------UGaagGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 27422 0.66 0.402832
Target:  5'- gCGCCuggcgcaccGCgCCCgGCGGCcgcaggcCCUGGCGCu -3'
miRNA:   3'- -GCGGu--------CG-GGGaUGCUGaa-----GGACCGCG- -5'
26514 5' -59.3 NC_005357.1 + 10116 0.66 0.402832
Target:  5'- aCGCCGGCCUUgaugGCGGCgaUgaGGuCGCg -3'
miRNA:   3'- -GCGGUCGGGGa---UGCUGaaGgaCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.